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4930579F01Rik RIKEN cDNA 4930579F01 gene [ Mus musculus (house mouse) ]

Gene ID: 67741, updated on 26-Sep-2022

Summary

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Official Symbol
4930579F01Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930579F01 geneprovided by MGI
Primary source
MGI:MGI:1914991
See related
Ensembl:ENSMUSG00000012042 AllianceGenome:MGI:1914991
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C4orf17 (chromosome 4 open reading frame 17). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 21.2) See more
Orthologs
human all
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Genomic context

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See 4930579F01Rik in Genome Data Viewer
Location:
3; 3 G3
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (137869839..137899592, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (138164078..138193831, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene microsomal triglyceride transfer protein Neighboring gene tRNA methyltransferase 10A Neighboring gene RIKEN cDNA 0610031O16 gene Neighboring gene alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide Neighboring gene predicted gene, 40156

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf17 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163385.1 → NP_001156857.1  uncharacterized protein C4orf17 homolog isoform 1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) encodes the longer predicted protein (isoform 1).
    Source sequence(s)
    AC131122
    Consensus CDS
    CCDS51081.1
    UniProtKB/TrEMBL
    E9Q3L6
    Related
    ENSMUSP00000012186.5, ENSMUST00000012186.9
    Conserved Domains (1) summary
    pfam15256
    Location:22 → 200
    SPATIAL; SPATIAL

  2. NM_001163386.1 → NP_001156858.1  uncharacterized protein C4orf17 homolog isoform 2

    See identical proteins and their annotated locations for NP_001156858.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) uses an alternate first splice donor site and the predicted protein (isoform 2) initiates from an internal AUG compared to variant 1. Variants 2 and 3 both encode the same isoform (2).
    Source sequence(s)
    AC131122
    Consensus CDS
    CCDS80031.1
    UniProtKB/TrEMBL
    A0A0G2JEX5
    Related
    ENSMUSP00000142940.2, ENSMUST00000199293.2
    Conserved Domains (1) summary
    pfam15256
    Location:2 → 75
    SPATIAL

  3. NM_001374685.1 → NP_001361614.1  uncharacterized protein C4orf17 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variant 2, encodes isoform 2.
    Source sequence(s)
    AC131122, AC163628
    UniProtKB/TrEMBL
    A0A0G2JEX5
    Conserved Domains (1) summary
    pfam15256
    Location:2 → 75
    SPATIAL

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    137869839..137899592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501946.3 → XP_006502009.1  uncharacterized protein C4orf17 homolog isoform X1

    See identical proteins and their annotated locations for XP_006502009.1

    UniProtKB/TrEMBL
    A0A0G2JEX5
    Conserved Domains (1) summary
    pfam15256
    Location:2 → 75
    SPATIAL
Nucleotide Protein Strain
Heading Accession and Version

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