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Luc7l3 LUC7-like 3 (S. cerevisiae) [ Mus musculus (house mouse) ]

Gene ID: 67684, updated on 5-Mar-2024

Summary

Official Symbol
Luc7l3provided by MGI
Official Full Name
LUC7-like 3 (S. cerevisiae)provided by MGI
Primary source
MGI:MGI:1914934
See related
Ensembl:ENSMUSG00000020863 AllianceGenome:MGI:1914934
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Luc7a; 3300001P08Rik
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to act upstream of or within mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in central nervous system and retina. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E14 (RPKM 59.6), CNS E11.5 (RPKM 55.5) and 18 other tissues See more
Orthologs
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Genomic context

See Luc7l3 in Genome Data Viewer
Location:
11 D; 11 58.9 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94181899..94213196, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94291073..94322329, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_30463 Neighboring gene STARR-positive B cell enhancer ABC_E11487 Neighboring gene predicted gene, 38956 Neighboring gene ANKRD40 C-terminal like Neighboring gene STARR-positive B cell enhancer ABC_E5270 Neighboring gene STARR-positive B cell enhancer ABC_E7046 Neighboring gene ankyrin repeat domain 40 Neighboring gene ATP-binding cassette, sub-family C member 3 Neighboring gene predicted gene, 51871

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in RNA splicing ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
luc7-like protein 3
Names
cisplatin resistance-associated overexpressed protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361573.1NP_001348502.1  luc7-like protein 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK019464, AK043494, AK151228
    Consensus CDS
    CCDS88224.1
    Related
    ENSMUSP00000129919.2, ENSMUST00000166312.8
    Conserved Domains (1) summary
    pfam03194
    Location:4233
    LUC7; LUC7 N_terminus
  2. NM_001361574.1NP_001348503.1  luc7-like protein 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL645846, AL645965
    Consensus CDS
    CCDS88223.1
    UniProtKB/Swiss-Prot
    Q3U9D5, Q5SUF2, Q8BUJ5, Q921Z3, Q9CRS7, Q9CTY4
    Related
    ENSMUSP00000103450.2, ENSMUST00000107820.2
    Conserved Domains (1) summary
    pfam03194
    Location:4233
    LUC7; LUC7 N_terminus
  3. NM_001361575.1NP_001348504.1  luc7-like protein 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL645846, AL645965
    Consensus CDS
    CCDS88223.1
    UniProtKB/Swiss-Prot
    Q3U9D5, Q5SUF2, Q8BUJ5, Q921Z3, Q9CRS7, Q9CTY4
    Related
    ENSMUSP00000103451.3, ENSMUST00000107821.9
    Conserved Domains (1) summary
    pfam03194
    Location:4233
    LUC7; LUC7 N_terminus
  4. NM_026313.2NP_080589.1  luc7-like protein 3 isoform 1

    See identical proteins and their annotated locations for NP_080589.1

    Status: VALIDATED

    Source sequence(s)
    AL645846, AL645965
    Consensus CDS
    CCDS25252.1
    UniProtKB/Swiss-Prot
    Q5SUF2
    Related
    ENSMUSP00000021226.8, ENSMUST00000021226.14
    Conserved Domains (1) summary
    pfam03194
    Location:4233
    LUC7; LUC7 N_terminus

RNA

  1. NR_155068.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL645846, AL645965
  2. NR_155069.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL645846, AL645965

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    94181899..94213196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156917.1XP_036012810.1  luc7-like protein 3 isoform X3

    Conserved Domains (1) summary
    cl27291
    Location:158
    LUC7; LUC7 N_terminus
  2. XM_036156915.1XP_036012808.1  luc7-like protein 3 isoform X1

    Conserved Domains (1) summary
    pfam03194
    Location:4170
    LUC7; LUC7 N_terminus
  3. XM_036156916.1XP_036012809.1  luc7-like protein 3 isoform X2

    Conserved Domains (1) summary
    cl27291
    Location:4170
    LUC7; LUC7 N_terminus

RNA

  1. XR_001780043.3 RNA Sequence

  2. XR_001780044.3 RNA Sequence

  3. XR_388511.5 RNA Sequence