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Pbdc1 polysaccharide biosynthesis domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 67683, updated on 8-Dec-2018

Summary

Official Symbol
Pbdc1provided by MGI
Official Full Name
polysaccharide biosynthesis domain containing 1provided by MGI
Primary source
MGI:MGI:1914933
See related
Ensembl:ENSMUSG00000031226
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610029G23Rik
Expression
Broad expression in CNS E11.5 (RPKM 9.4), liver E14 (RPKM 5.5) and 25 other tissues See more
Orthologs

Genomic context

See Pbdc1 in Genome Data Viewer
Location:
X; X D
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (105079756..105117094)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (102275114..102280525)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5530601H04 gene Neighboring gene swi5-dependent recombination DNA repair protein 1 homolog Neighboring gene melanoma antigen, family E, 1 Neighboring gene predicted gene, 45946

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
protein PBDC1
Names
UPF0368 protein Cxorf26 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281871.1NP_001268800.1  protein PBDC1 isoform 2

    See identical proteins and their annotated locations for NP_001268800.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate 3' exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK076889, AL671897, BM898616
    Consensus CDS
    CCDS72419.1
    UniProtKB/Swiss-Prot
    Q9D0B6
    Related
    ENSMUSP00000113288.1, ENSMUST00000119477.1
    Conserved Domains (1) summary
    cl04661
    Location:35137
    Polysacc_synt_4; Polysaccharide biosynthesis
  2. NM_026312.5NP_080588.1  protein PBDC1 isoform 1

    See identical proteins and their annotated locations for NP_080588.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK030507, AL671897, BY389180
    Consensus CDS
    CCDS30334.1
    UniProtKB/Swiss-Prot
    Q9D0B6
    Related
    ENSMUSP00000033577.4, ENSMUST00000033577.10
    Conserved Domains (1) summary
    pfam04669
    Location:35158
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    105079756..105117094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528268.2XP_006528331.1  protein PBDC1 isoform X4

    Conserved Domains (1) summary
    pfam04669
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis
  2. XM_006528266.2XP_006528329.1  protein PBDC1 isoform X2

    Conserved Domains (1) summary
    cl04661
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis
  3. XM_006528269.2XP_006528332.1  protein PBDC1 isoform X5

    Conserved Domains (1) summary
    cl04661
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis
  4. XM_006528270.2XP_006528333.1  protein PBDC1 isoform X6

    Conserved Domains (1) summary
    pfam04669
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis
  5. XM_006528265.2XP_006528328.1  protein PBDC1 isoform X1

    Conserved Domains (1) summary
    cl04661
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis
  6. XM_006528267.2XP_006528330.1  protein PBDC1 isoform X3

    Conserved Domains (1) summary
    cl04661
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis

RNA

  1. XR_386928.3 RNA Sequence

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