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4930522H14Rik RIKEN cDNA 4930522H14 gene [ Mus musculus (house mouse) ]

Gene ID: 67646, updated on 26-Sep-2022

Summary

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Official Symbol
4930522H14Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930522H14 geneprovided by MGI
Primary source
MGI:MGI:1914896
See related
Ensembl:ENSMUSG00000060491 AllianceGenome:MGI:1914896
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700007J23Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1orf185 (chromosome 1 open reading frame 185). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 7.3) See more
Orthologs
human all
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Genomic context

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See 4930522H14Rik in Genome Data Viewer
Location:
4; 4 C7
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (109362529..109388494, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (109505332..109531297, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene Ttc39a opposite strand RNA 1 Neighboring gene ring finger protein 11 Neighboring gene predicted gene, 22497 Neighboring gene predicted gene, 40226

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Combined Use of Whole Exome Sequencing and CRISPR/Cas9 to Study the Etiology of Non-Obstructive Azoospermia: Demonstration of the Dispensable Role of the Testis-Specific Genes C1orf185 and CCT6B. Cazin C, et al. Cells, 2021 Dec 30. PMID 35011680, Free PMC Article
  2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf185 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199090.1 → NP_001186019.1  uncharacterized protein C1orf185 homolog isoform 2

    See identical proteins and their annotated locations for NP_001186019.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR and CDS, compared to variant 1. It encodes isoform 2, which has a shorter and distinct N-terminus, compared to variant 1.
    Source sequence(s)
    AK005726, AL627446
    Consensus CDS
    CCDS57290.1
    UniProtKB/Swiss-Prot
    Q9CPZ3
    Related
    ENSMUSP00000080923.8, ENSMUST00000082306.8
    Conserved Domains (1) summary
    pfam15842
    Location:3 → 186
    DUF4718; Domain of unknown function (DUF4718)

  2. NM_026291.3 → NP_080567.1  uncharacterized protein C1orf185 homolog isoform 1

    See identical proteins and their annotated locations for NP_080567.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
    Source sequence(s)
    AK019777, AL627446
    Consensus CDS
    CCDS18465.1
    UniProtKB/Swiss-Prot
    Q9CPZ3, Q9DAM0
    Related
    ENSMUSP00000099786.5, ENSMUST00000102725.11
    Conserved Domains (1) summary
    pfam15842
    Location:7 → 190
    DUF4718; Domain of unknown function (DUF4718)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    109362529..109388494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CPZ3.1 GenPept UniProtKB/Swiss-Prot:Q9CPZ3

Gene LinkOut

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