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Rps20 ribosomal protein S20 [ Mus musculus (house mouse) ]

Gene ID: 67427, updated on 5-Jan-2023

Summary

Official Symbol
Rps20provided by MGI
Official Full Name
ribosomal protein S20provided by MGI
Primary source
MGI:MGI:1914677
See related
Ensembl:ENSMUSG00000028234 AllianceGenome:MGI:1914677
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dsk4; 4632426K06Rik
Summary
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Dec 2015]
Expression
Ubiquitous expression in liver E14 (RPKM 147.0), limb E14.5 (RPKM 117.4) and 28 other tissues See more
Orthologs
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Genomic context

See Rps20 in Genome Data Viewer
Location:
4; 4 A1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (3831584..3835655, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (3831584..3835655, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene LYN proto-oncogene, Src family tyrosine kinase Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 22781 Neighboring gene predicted gene, 24016 Neighboring gene predicted gene, 32823 Neighboring gene predicted gene, 24125 Neighboring gene Moloney sarcoma oncogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102408

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables MDM2/MDM4 family protein binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin ligase inhibitor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in positive regulation of signal transduction by p53 class mediator ISO
Inferred from Sequence Orthology
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026147.7NP_080423.1  40S ribosomal protein S20

    See identical proteins and their annotated locations for NP_080423.1

    Status: VALIDATED

    Source sequence(s)
    AL772401, AL807387
    Consensus CDS
    CCDS17940.1
    UniProtKB/Swiss-Prot
    P17075, P60867
    UniProtKB/TrEMBL
    A0A6P5PF73, A0A8C6I0A6, Q5BLK2
    Related
    ENSMUSP00000120528.2, ENSMUST00000138502.2
    Conserved Domains (1) summary
    cl00314
    Location:16116
    Ribosomal_S10; Ribosomal protein S10p/S20e

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    3831584..3835655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)