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4833420G17Rik RIKEN cDNA 4833420G17 gene [ Mus musculus (house mouse) ]

Gene ID: 67392, updated on 23-Jun-2021

Summary

Official Symbol
4833420G17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4833420G17 geneprovided by MGI
Primary source
MGI:MGI:1914642
See related
Ensembl:ENSMUSG00000062822
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C85193; AW107518; 2210017J06Rik; 5730533D17Rik
Expression
Ubiquitous expression in CNS E14 (RPKM 19.2), whole brain E14.5 (RPKM 16.3) and 25 other tissues See more
Orthologs
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Genomic context

See 4833420G17Rik in Genome Data Viewer
Location:
13; 13 D2.3
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (119599295..119622656)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (119462015..119486120)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (120251566..120274924)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene RIKEN cDNA 3110070M22 gene Neighboring gene polyadenylate binding protein-interacting protein 1 Neighboring gene transmembrane protein 267 Neighboring gene chemokine (C-C motif) ligand 28

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C5orf34 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113550.1NP_001107022.1  uncharacterized protein C5orf34 homolog

    See identical proteins and their annotated locations for NP_001107022.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate internal 5' UTR segment, as compared to variant 1.
    Source sequence(s)
    AK008565, AK146515
    Consensus CDS
    CCDS49373.1
    UniProtKB/Swiss-Prot
    Q3UJC8
    Related
    ENSMUSP00000026519.9, ENSMUST00000026519.10
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
  2. NM_001360805.1NP_001347734.1  uncharacterized protein C5orf34 homolog

    Status: VALIDATED

    Source sequence(s)
    AC163689
    Consensus CDS
    CCDS49373.1
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
  3. NM_026127.4NP_080403.4  uncharacterized protein C5orf34 homolog

    See identical proteins and their annotated locations for NP_080403.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK008565, AK146515, BC030738, CK389219
    Consensus CDS
    CCDS49373.1
    UniProtKB/Swiss-Prot
    Q3UJC8
    Related
    ENSMUSP00000153079.2, ENSMUST00000225186.2
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)

RNA

  1. NR_153825.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163689
    Related
    ENSMUST00000225726.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    119599295..119622656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517747.2XP_006517810.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517810.1

    UniProtKB/Swiss-Prot
    Q3UJC8
    Related
    ENSMUSP00000153150.2, ENSMUST00000224312.2
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
  2. XM_006517744.2XP_006517807.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517807.1

    UniProtKB/Swiss-Prot
    Q3UJC8
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
  3. XM_006517748.2XP_006517811.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517811.1

    UniProtKB/Swiss-Prot
    Q3UJC8
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
  4. XM_006517743.2XP_006517806.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517806.1

    UniProtKB/Swiss-Prot
    Q3UJC8
    Conserved Domains (2) summary
    pfam15016
    Location:455541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9153
    DUF4524; Domain of unknown function (DUF4524)
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