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Agtpbp1 ATP/GTP binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 67269, updated on 12-May-2024

Summary

Official Symbol
Agtpbp1provided by MGI
Official Full Name
ATP/GTP binding protein 1provided by MGI
Primary source
MGI:MGI:2159437
See related
Ensembl:ENSMUSG00000021557 AllianceGenome:MGI:2159437
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
pcd; CCP1; Nna1; atms; nmf243; 1700020N17Rik; 2310001G17Rik; 2900054O13Rik; 4930445M19Rik; 5730402G09Rik
Summary
Enables metallocarboxypeptidase activity and tubulin binding activity. Involved in several processes, including nervous system development; neuromuscular process; and protein deglutamylation. Acts upstream of or within several processes, including adult walking behavior; axonal transport of mitochondrion; and central nervous system neuron differentiation. Located in cytosol; mitochondrion; and nucleus. Is expressed in central nervous system; dorsal root ganglion; and retina. Used to study retinitis pigmentosa. Orthologous to human AGTPBP1 (ATP/GTP binding carboxypeptidase 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 16.1), cortex adult (RPKM 14.6) and 21 other tissues See more
Orthologs
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Genomic context

See Agtpbp1 in Genome Data Viewer
Location:
13 B2; 13
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (59597348..59705184, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (59449534..59557370, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34721 Neighboring gene predicted gene, 34788 Neighboring gene STARR-seq mESC enhancer starr_34711 Neighboring gene RIKEN cDNA A230056J06 gene Neighboring gene STARR-seq mESC enhancer starr_34713 Neighboring gene N(alpha)-acetyltransferase 35, NatC auxiliary subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (6)  1 citation
  • Endonuclease-mediated (1) 
  • Gene trapped (1) 
  • Spontaneous (8)  1 citation
  • Targeted (4)  1 citation
  • Transgenic (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC90651, mKIAA1035, 1700020N17Rik, 2310001G17Rik, 2900054O13Rik, 4930445M19Rik, 5730402G09Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metallocarboxypeptidase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables metallocarboxypeptidase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables metallocarboxypeptidase activity ISO
Inferred from Sequence Orthology
more info
 
enables metallocarboxypeptidase activity TAS
Traceable Author Statement
more info
 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables peptidase activity TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables tubulin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in C-terminal protein deglutamylation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in C-terminal protein deglutamylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in C-terminal protein deglutamylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in C-terminal protein deglutamylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within adult walking behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within anterograde axonal transport of mitochondrion IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within axonal transport IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within central nervous system neuron development IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within cerebellar Purkinje cell differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within cerebellar Purkinje cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cerebellar Purkinje cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cerebellar Purkinje cell layer development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cerebellum development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in eye photoreceptor cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of cell population proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within negative regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within neuromuscular process IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in neuromuscular process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in olfactory bulb development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein deglutamylation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within protein deglutamylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein deglutamylation ISO
Inferred from Sequence Orthology
more info
 
involved_in protein side chain deglutamylation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein side chain deglutamylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein side chain deglutamylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein side chain deglutamylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within retrograde axonal transport of mitochondrion IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cytosolic carboxypeptidase 1
Names
Purkinje cell degeneration
nervous system nuclear protein induced by axotomy protein 1
nuclear ATP/GTP-binding protein
protein deglutamylase CCP1
NP_001041473.1
NP_001271147.1
NP_001271148.1
NP_001271150.1
NP_001364026.1
NP_075817.2
XP_006517399.1
XP_006517400.1
XP_006517401.1
XP_006517402.1
XP_006517403.1
XP_006517405.1
XP_011242858.1
XP_011242859.1
XP_030103240.1
XP_036014026.1
XP_036014027.1
XP_036014028.1
XP_036014030.1
XP_036014031.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048008.2NP_001041473.1  cytosolic carboxypeptidase 1 isoform 2

    See identical proteins and their annotated locations for NP_001041473.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several exons, and uses an alternate 3'-terminal exon, compared to variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AK132695, BB707303, CA528796
    Consensus CDS
    CCDS36687.1
    UniProtKB/TrEMBL
    F6ZCF0
    Related
    ENSMUSP00000105456.3, ENSMUST00000109830.9
  2. NM_001284218.1NP_001271147.1  cytosolic carboxypeptidase 1 isoform 2

    See identical proteins and their annotated locations for NP_001271147.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks several exons, and uses an alternate 3'-terminal exon, compared to variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AK132695, AK133215, BB707303, CA528796
    Consensus CDS
    CCDS36687.1
    UniProtKB/TrEMBL
    F6ZCF0
    Related
    ENSMUSP00000132697.2, ENSMUST00000171606.9
    Conserved Domains (1) summary
    pfam15576
    Location:451516
    DUF4661; Domain of unknown function (DUF4661)
  3. NM_001284219.1NP_001271148.1  cytosolic carboxypeptidase 1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in its 5' UTR and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC135469, AK013688, BC060633, BC082335, BY597236
    UniProtKB/Swiss-Prot
    Q641K1
    Conserved Domains (2) summary
    cd06906
    Location:596866
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:439573
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  4. NM_001284221.2NP_001271150.1  cytosolic carboxypeptidase 1 isoform 4

    See identical proteins and their annotated locations for NP_001271150.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) has a shorter 5' UTR and uses an alternate 3'-terminal exon, compared to variant 1. The encoded isoform (4) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC135469
    Consensus CDS
    CCDS70470.1
    UniProtKB/Swiss-Prot
    Q641K1
    UniProtKB/TrEMBL
    Q8C1R2
    Related
    ENSMUSP00000130939.2, ENSMUST00000164215.8
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  5. NM_001377097.1NP_001364026.1  cytosolic carboxypeptidase 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC135469
    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  6. NM_023328.3NP_075817.2  cytosolic carboxypeptidase 1 isoform 1

    See identical proteins and their annotated locations for NP_075817.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK013688, AK015394, BC060633, BC082335, BY597236, CA528796
    Consensus CDS
    CCDS36686.1
    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Related
    ENSMUSP00000022040.7, ENSMUST00000022040.14
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    59597348..59705184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244557.4XP_011242859.1  cytosolic carboxypeptidase 1 isoform X4

    Conserved Domains (2) summary
    cd06906
    Location:8611110
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  2. XM_036158137.1XP_036014030.1  cytosolic carboxypeptidase 1 isoform X5

    Conserved Domains (2) summary
    cd06906
    Location:7541024
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:597731
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  3. XM_036158135.1XP_036014028.1  cytosolic carboxypeptidase 1 isoform X3

    Conserved Domains (2) summary
    cd06906
    Location:8031073
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:646780
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  4. XM_006517339.3XP_006517402.1  cytosolic carboxypeptidase 1 isoform X2

    See identical proteins and their annotated locations for XP_006517402.1

    Conserved Domains (2) summary
    cd06906
    Location:8121082
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:655789
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  5. XM_036158138.1XP_036014031.1  cytosolic carboxypeptidase 1 isoform X6

    Conserved Domains (2) summary
    cd06906
    Location:596866
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:439573
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  6. XM_030247380.1XP_030103240.1  cytosolic carboxypeptidase 1 isoform X6

    Conserved Domains (2) summary
    cd06906
    Location:596866
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:439573
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  7. XM_006517342.4XP_006517405.1  cytosolic carboxypeptidase 1 isoform X5

    Conserved Domains (2) summary
    cd06906
    Location:7541024
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:597731
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  8. XM_006517340.4XP_006517403.1  cytosolic carboxypeptidase 1 isoform X3

    Conserved Domains (2) summary
    cd06906
    Location:8031073
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:646780
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  9. XM_036158134.1XP_036014027.1  cytosolic carboxypeptidase 1 isoform X3

    Conserved Domains (2) summary
    cd06906
    Location:8031073
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:646780
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  10. XM_011244556.3XP_011242858.1  cytosolic carboxypeptidase 1 isoform X2

    See identical proteins and their annotated locations for XP_011242858.1

    Conserved Domains (2) summary
    cd06906
    Location:8121082
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:655789
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  11. XM_006517336.4XP_006517399.1  cytosolic carboxypeptidase 1 isoform X1

    See identical proteins and their annotated locations for XP_006517399.1

    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  12. XM_006517338.5XP_006517401.1  cytosolic carboxypeptidase 1 isoform X1

    See identical proteins and their annotated locations for XP_006517401.1

    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  13. XM_006517337.5XP_006517400.1  cytosolic carboxypeptidase 1 isoform X1

    See identical proteins and their annotated locations for XP_006517400.1

    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
  14. XM_036158133.1XP_036014026.1  cytosolic carboxypeptidase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q3TDS0, Q3V147, Q641K1, Q6P9R9, Q8C1K8, Q9D962, Q9EQI4
    Conserved Domains (2) summary
    cd06906
    Location:8611131
    M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases
    pfam18027
    Location:704838
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

RNA

  1. XR_004938054.1 RNA Sequence

  2. XR_004938055.1 RNA Sequence

  3. XR_003950467.2 RNA Sequence

  4. XR_004938053.1 RNA Sequence