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LOC6726010 histone deacetylase 6 [ Drosophila simulans ]

Gene ID: 6726010, updated on 25-Jan-2024

Summary

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Gene symbol
LOC6726010
Gene description
histone deacetylase 6
Locus tag
Dsimw501_GD17207
See related
EnsemblRapid:LOC6726010
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila simulans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
HDAC2; HDAC6; GD17207; HDAC6-PB; Dsim\HDAC6; GD17207-PB
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Genomic context

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Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Prin_Dsim_3.1 (GCF_016746395.2) X NC_052525.2 (14780720..14787837)
102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) X NC_052525.1 (14780772..14787886)

Chromosome X - NC_052525.2Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase 1 Neighboring gene uncharacterized LOC6726008 Neighboring gene uncharacterized LOC6726009 Neighboring gene p21-activated protein kinase-interacting protein 1-like Neighboring gene probable ATP-dependent RNA helicase DDX46 Neighboring gene inhibitory POU protein Neighboring gene serine/threonine-protein phosphatase alpha-3 isoform

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6
Names
Dsim\GD17207
Dsim\GD17207-PB
Dsim\HDAC6-PB
dsim_GLEANR_17355

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dsim_3.1

Genomic

  1. NC_052525.2 Reference Prin_Dsim_3.1

    Range
    14780720..14787837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039297014.2 → XP_039152948.1  histone deacetylase 6 isoform X2

    Related
    XP_039152948.1, XM_039297014.2
    Conserved Domains (2) summary
    cd10002
    Location:123 → 461
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    cd10003
    Location:542 → 899
    HDAC6-dom2; Histone deacetylase 6, domain 2

  2. XM_039297015.2 → XP_039152949.1  histone deacetylase 6 isoform X3

    Related
    XP_039152949.1, XM_039297015.2
    Conserved Domains (2) summary
    cd10002
    Location:123 → 461
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    cd10003
    Location:542 → 899
    HDAC6-dom2; Histone deacetylase 6, domain 2

  3. XM_016173938.3 → XP_016039385.2  histone deacetylase 6 isoform X1

    Related
    XP_016039385.2, XM_016173938.3
    Conserved Domains (4) summary
    cd10002
    Location:123 → 461
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    cd10003
    Location:542 → 899
    HDAC6-dom2; Histone deacetylase 6, domain 2
    COG5207
    Location:899 → 1064
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    pfam02148
    Location:1011 → 1073
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein Strain
Heading Accession and Version

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