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Cmtm6 CKLF-like MARVEL transmembrane domain containing 6 [ Mus musculus (house mouse) ]

Gene ID: 67213, updated on 22-Jan-2023

Summary

Official Symbol
Cmtm6provided by MGI
Official Full Name
CKLF-like MARVEL transmembrane domain containing 6provided by MGI
Primary source
MGI:MGI:2447165
See related
Ensembl:ENSMUSG00000032434 AllianceGenome:MGI:2447165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cklfsf6; 2810051A14Rik
Summary
Predicted to be involved in endocytic recycling; protein transport; and regulation of protein stability. Predicted to be located in early endosome membrane; plasma membrane; and recycling endosome membrane. Predicted to be integral component of membrane. Orthologous to human CMTM6 (CKLF like MARVEL transmembrane domain containing 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in large intestine adult (RPKM 31.1), lung adult (RPKM 29.4) and 28 other tissues See more
Orthologs
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Genomic context

See Cmtm6 in Genome Data Viewer
Location:
9; 9 F3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (114560230..114578415)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (114731157..114749359)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene 7780 Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene CKLF-like MARVEL transmembrane domain containing 7 Neighboring gene CKLF-like MARVEL transmembrane domain containing 8 Neighboring gene predicted gene, 23889

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in endocytic recycling ISO
Inferred from Sequence Orthology
more info
 
involved_in protein transport ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of protein stability ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in early endosome membrane ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in recycling endosome membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
CKLF-like MARVEL transmembrane domain-containing protein 6
Names
chemokine-like factor super family 6
chemokine-like factor superfamily 6
chemokine-like factor superfamily member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026036.3NP_080312.1  CKLF-like MARVEL transmembrane domain-containing protein 6

    See identical proteins and their annotated locations for NP_080312.1

    Status: PROVISIONAL

    Source sequence(s)
    AC161419
    Consensus CDS
    CCDS23596.1
    UniProtKB/Swiss-Prot
    Q922J1, Q9CZ69
    Related
    ENSMUSP00000035007.9, ENSMUST00000035007.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    114560230..114578415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006512242.4XP_006512305.1  CKLF-like MARVEL transmembrane domain-containing protein 6 isoform X1