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Rps10 ribosomal protein S10 [ Mus musculus (house mouse) ]

Gene ID: 67097, updated on 8-Dec-2022

Summary

Official Symbol
Rps10provided by MGI
Official Full Name
ribosomal protein S10provided by MGI
Primary source
MGI:MGI:1914347
See related
Ensembl:ENSMUSG00000052146 AllianceGenome:MGI:1914347
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210402A09Rik
Summary
Predicted to enable tRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in cytosolic ribosome and nucleolus. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including branchial arch; limb; maxillary process; sensory organ; and trunk somite. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to several human genes including RPS10 (ribosomal protein S10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14.5 (RPKM 330.1), liver E14 (RPKM 286.1) and 28 other tissues See more
Orthologs
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Genomic context

See Rps10 in Genome Data Viewer
Location:
17; 17 A3.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (27849389..27854218, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (27630415..27635244, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 29 Neighboring gene nudix hydrolase 3 Neighboring gene predicted gene 15420 Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene SAM pointed domain containing ets transcription factor

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC107635

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
enables tRNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation at postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation at presynapse NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in presynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in synapse NAS
Non-traceable Author Statement
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364934.1NP_001351863.1  40S ribosomal protein S10 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC131800, AK136533, CJ042533
    Consensus CDS
    CCDS89035.1
    UniProtKB/TrEMBL
    A0A8C6MRP8, Q3UW83
    Related
    ENSMUSP00000025052.7, ENSMUST00000025052.14
    Conserved Domains (1) summary
    pfam03501
    Location:397
    S10_plectin; Plectin/S10 domain
  2. NM_025963.4NP_080239.1  40S ribosomal protein S10 isoform 1

    See identical proteins and their annotated locations for NP_080239.1

    Status: VALIDATED

    Source sequence(s)
    AC131800
    Consensus CDS
    CCDS37522.1
    UniProtKB/Swiss-Prot
    P63325, Q9DCR5
    UniProtKB/TrEMBL
    A0A6P5RGE9, A0A8C6GJ13, Q5M9K7
    Related
    ENSMUSP00000110532.2, ENSMUST00000114882.9
    Conserved Domains (1) summary
    pfam03501
    Location:397
    S10_plectin; Plectin/S10 domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    27849389..27854218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)