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Rbm25 RNA binding motif protein 25 [ Mus musculus (house mouse) ]

Gene ID: 67039, updated on 23-Jun-2021

Summary

Official Symbol
Rbm25provided by MGI
Official Full Name
RNA binding motif protein 25provided by MGI
Primary source
MGI:MGI:1914289
See related
Ensembl:ENSMUSG00000010608
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RNPC7; AI159652; AL023075; AU043498; 2600011C06Rik; 2610015J01Rik; A130095G20Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 31.0), CNS E14 (RPKM 19.1) and 27 other tissues See more
Orthologs
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Genomic context

See Rbm25 in Genome Data Viewer
Location:
12; 12 D1
Exon count:
25
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (83678990..83729901)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (83632208..83683127)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (84973184..85024073)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 4 Neighboring gene zinc finger, FYVE domain containing 1 Neighboring gene H2A histone family, member Z pseudogene Neighboring gene presenilin 1 Neighboring gene farnesyl diphosphate synthetase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364415.1NP_001351344.1  RNA-binding protein 25 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC055772
    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  2. NM_001364416.1NP_001351345.1  RNA-binding protein 25 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC055772
    Consensus CDS
    CCDS49107.1
    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  3. NM_027349.4NP_081625.3  RNA-binding protein 25 isoform 2

    See identical proteins and their annotated locations for NP_081625.3

    Status: VALIDATED

    Source sequence(s)
    AC055772, AK011403, AK142132, BY169048, CJ063347
    Consensus CDS
    CCDS49107.1
    UniProtKB/Swiss-Prot
    B2RY56
    Related
    ENSMUSP00000048470.9, ENSMUST00000048155.16
    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    83678990..83729901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157593.1XP_036013486.1  RNA-binding protein 25 isoform X4

    Conserved Domains (2) summary
    smart00311
    Location:740813
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  2. XM_006516166.4XP_006516229.1  RNA-binding protein 25 isoform X1

    See identical proteins and their annotated locations for XP_006516229.1

    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  3. XM_036157590.1XP_036013483.1  RNA-binding protein 25 isoform X2

    Conserved Domains (2) summary
    smart00311
    Location:759832
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  4. XM_006516168.5XP_006516231.1  RNA-binding protein 25 isoform X3

    See identical proteins and their annotated locations for XP_006516231.1

    UniProtKB/Swiss-Prot
    B2RY56
    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  5. XM_006516164.5XP_006516227.1  RNA-binding protein 25 isoform X1

    See identical proteins and their annotated locations for XP_006516227.1

    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  6. XM_036157594.1XP_036013487.1  RNA-binding protein 25 isoform X4

    Conserved Domains (2) summary
    smart00311
    Location:740813
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  7. XM_036157595.1XP_036013488.1  RNA-binding protein 25 isoform X4

    Conserved Domains (2) summary
    smart00311
    Location:740813
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  8. XM_030246879.2XP_030102739.1  RNA-binding protein 25 isoform X5

    Conserved Domains (1) summary
    smart00311
    Location:554627
    PWI; domain in splicing factors
  9. XM_036157591.1XP_036013484.1  RNA-binding protein 25 isoform X3

    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  10. XM_036157596.1XP_036013489.1  RNA-binding protein 25 isoform X5

    Conserved Domains (1) summary
    smart00311
    Location:554627
    PWI; domain in splicing factors
  11. XM_006516165.5XP_006516228.1  RNA-binding protein 25 isoform X1

    See identical proteins and their annotated locations for XP_006516228.1

    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  12. XM_036157589.1XP_036013482.1  RNA-binding protein 25 isoform X2

    Conserved Domains (2) summary
    smart00311
    Location:759832
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  13. XM_036157588.1XP_036013481.1  RNA-binding protein 25 isoform X1

    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  14. XM_036157592.1XP_036013485.1  RNA-binding protein 25 isoform X3

    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  15. XM_030246881.2XP_030102741.1  RNA-binding protein 25 isoform X5

    Conserved Domains (1) summary
    smart00311
    Location:554627
    PWI; domain in splicing factors
  16. XM_006516169.5XP_006516232.1  RNA-binding protein 25 isoform X5

    See identical proteins and their annotated locations for XP_006516232.1

    UniProtKB/Swiss-Prot
    B2RY56
    Conserved Domains (1) summary
    smart00311
    Location:554627
    PWI; domain in splicing factors
  17. XM_036157587.1XP_036013480.1  RNA-binding protein 25 isoform X1

    Conserved Domains (2) summary
    smart00311
    Location:777850
    PWI; domain in splicing factors
    cd12446
    Location:106188
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
  18. XM_030246878.2XP_030102738.1  RNA-binding protein 25 isoform X3

    Conserved Domains (2) summary
    smart00311
    Location:758831
    PWI; domain in splicing factors
    cd12446
    Location:87169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
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