U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Neat1 nuclear paraspeckle assembly transcript 1 (non-protein coding) [ Mus musculus (house mouse) ]

Gene ID: 66961, updated on 24-Jan-2023

Summary

Official Symbol
Neat1provided by MGI
Official Full Name
nuclear paraspeckle assembly transcript 1 (non-protein coding)provided by MGI
Primary source
MGI:MGI:1914211
See related
Ensembl:ENSMUSG00000092274 AllianceGenome:MGI:1914211
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
VINC; 2310043N10Rik
Summary
This gene produces a long non-coding RNA (lncRNA) that is retained in the nucleus where it forms the core structural component of the paraspeckle sub-organelles. It may act as a transcriptional regulator for numerous genes, including some genes involved in cancer progression. [provided by RefSeq, Mar 2015]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Neat1 in Genome Data Viewer
Location:
19; 19 A
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5874736..5895508, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5824708..5845480, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1-like 1 (S. cerevisiae) Neighboring gene Malat1-associated small cytoplasmic RNA Neighboring gene metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) Neighboring gene FERM domain containing 8, opposite strand Neighboring gene FERM domain containing 8 Neighboring gene solute carrier family 25, member 45

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • virus-inducible ncRNA

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nuclear body IDA
Inferred from Direct Assay
more info
PubMed 
located_in paraspeckles IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003513.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant has a shorter 3' end compared to the MENbeta variant. This results in a shorter transcript, known as MENepsilon.
    Source sequence(s)
    AA738862, AK159773
  2. NR_131212.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant represents the longer transcript, known as MENbeta.
    Source sequence(s)
    GQ859163
    Related
    ENSMUST00000173672.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5874736..5895508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)