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Vmn2r88 vomeronasal 2, receptor 88 [ Mus musculus (house mouse) ]

Gene ID: 669149, updated on 26-Sep-2022

Summary

Official Symbol
Vmn2r88provided by MGI
Official Full Name
vomeronasal 2, receptor 88provided by MGI
Primary source
MGI:MGI:1316662
See related
Ensembl:ENSMUSG00000000606 AllianceGenome:MGI:1316662
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V2r3; V2r13
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Vmn2r88 in Genome Data Viewer
Location:
14; 14 C1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (51648458..51656984)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (51411001..51419527)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 8 pseudogene Neighboring gene predicted gene 7247 Neighboring gene vomeronasal 2, receptor, pseudogene 110 Neighboring gene vomeronasal 2, receptor, pseudogene 111 Neighboring gene vomeronasal 2, receptor 89

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
vomeronasal 2, receptor 88
Names
vomeronasal 2, receptor, 13
vomeronasal 2, receptor, 3
vomeronasal organ family 2, receptor, 13
vomeronasal organ family 2, receptor, 3
vomeronasal receptor Vmn2r88

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368932.1NP_001355861.1  vomeronasal 2, receptor 88 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC122858
    Consensus CDS
    CCDS88654.1
    UniProtKB/TrEMBL
    F7D4U1
    Related
    ENSMUSP00000125126.3, ENSMUST00000159674.4
    Conserved Domains (3) summary
    cd06365
    Location:40500
    PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    cd15283
    Location:581832
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:510561
    NCD3G; Nine Cysteines Domain of family 3 GPCR
  2. NM_001368934.1NP_001355863.1  vomeronasal 2, receptor 88 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC122858
    Consensus CDS
    CCDS88655.1
    UniProtKB/TrEMBL
    F6U6R2
    Related
    ENSMUSP00000124837.3, ENSMUST00000163019.9
    Conserved Domains (1) summary
    cd06365
    Location:40431
    PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  3. NM_001385269.1NP_001372198.1  vomeronasal 2, receptor 88 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC122858
    UniProtKB/TrEMBL
    A0A3B2W7D8
    Related
    ENSMUSP00000156456.2, ENSMUST00000233394.2
    Conserved Domains (3) summary
    cd15283
    Location:582833
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:46500
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam07562
    Location:508562
    NCD3G; Nine Cysteines Domain of family 3 GPCR
  4. NM_001385270.1NP_001372199.1  vomeronasal 2, receptor 88 isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AC122858
    UniProtKB/TrEMBL
    A0A3B2W498
    Related
    ENSMUSP00000156821.2, ENSMUST00000233766.2
    Conserved Domains (1) summary
    cl10011
    Location:46432
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    51648458..51656984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519400.1XP_006519463.1  vomeronasal 2, receptor 88 isoform X1

    Conserved Domains (3) summary
    cd15283
    Location:582833
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:517562
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd06365
    Location:46500
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  2. XM_036158822.1XP_036014715.1  vomeronasal 2, receptor 88 isoform X4

    Conserved Domains (2) summary
    cd15283
    Location:541792
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:46500
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  3. XM_030247959.1XP_030103819.1  vomeronasal 2, receptor 88 isoform X2

    Conserved Domains (3) summary
    cd15283
    Location:583834
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:510563
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd06365
    Location:46500
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
  4. XM_036158823.1XP_036014716.1  vomeronasal 2, receptor 88 isoform X5

    UniProtKB/TrEMBL
    A0A3B2WB46
    Related
    ENSMUSP00000156671.2, ENSMUST00000232951.2
    Conserved Domains (2) summary
    cd15283
    Location:506757
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cl10011
    Location:46481
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
  5. XM_036158821.1XP_036014714.1  vomeronasal 2, receptor 88 isoform X3

    Conserved Domains (3) summary
    cd15283
    Location:579830
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cd06365
    Location:46498
    PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam07562
    Location:506559
    NCD3G; Nine Cysteines Domain of family 3 GPCR

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_011686.1: Suppressed sequence

    Description
    NM_011686.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.