H2-T-ps histocompatibility 2, T region locus, pseudogene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: H2-T-psprovided by MGI
Official Full Name: histocompatibility 2, T region locus, pseudogeneprovided by MGI
Primary source: MGI:MGI:2442805
See related: Ensembl:ENSMUSG00000073405 AllianceGenome:MGI:2442805
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: H2-T11; C920025E04Rik
Summary: Is expressed in several structures, including brain; thymus; and urinary system. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in liver adult (RPKM 45.7), thymus adult (RPKM 27.1) and 14 other tissues See more
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Genomic context

Location:: 17; 17 B1

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	17	NC_000083.7 (36419922..36422568, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	17	NC_000083.6 (36109030..36111723, complement)

Chromosome 17 - NC_000083.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

33.MMHAP25FLC6.seq (e-PCR)
- UniSTS:124030

H2-T11 (e-PCR), detects polymorphism
- UniSTS:525238

H2-T23 (e-PCR), detects polymorphism
- UniSTS:525242

Homology

Homologs of the H2-T-ps gene: The H2-T-ps gene is conserved in human, chimpanzee, Rhesus monkey, and rat.
Orthologs

General protein information

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Preferred Names: H-2 class I histocompatibility antigen-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001271005.1 → NP_001257934.1 H-2 class I histocompatibility antigen-like precursor

Status: PROVISIONAL

Source sequence(s)

CT030728

Related

ENSMUST00000172538.2

Conserved Domains (2) summary

cd07698
Location:203 → 295

IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

pfam00129
Location:22 → 199

MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2