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Gm17019 predicted gene 17019 [ Mus musculus (house mouse) ]

Gene ID: 66773, updated on 26-Sep-2022

Summary

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Official Symbol
Gm17019provided by MGI
Official Full Name
predicted gene 17019provided by MGI
Primary source
MGI:MGI:4868370
See related
Ensembl:ENSMUSG00000091897 AllianceGenome:MGI:4868370
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 9.8) and ovary adult (RPKM 0.9) See more
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Genomic context

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See Gm17019 in Genome Data Viewer
Location:
5; 5 A2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15078964..15083030, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15028950..15033016, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4e Neighboring gene predicted gene 10354 Neighboring gene predicted gene, 21149 Neighboring gene predicted gene, 21847 Neighboring gene predicted gene, 21190

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
spermatogenesis associated glutamate (E)-rich protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182957.1 → NP_892002.1  spermatogenesis associated glutamate (E)-rich protein 4-like

    Status: VALIDATED

    Source sequence(s)
    AC132090
    Consensus CDS
    CCDS51419.1
    UniProtKB/TrEMBL
    K7N6W5
    Related
    ENSMUSP00000127520.2, ENSMUST00000167908.2
    Conserved Domains (1) summary
    pfam04822
    Location:52 → 133
    Takusan; Takusan

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15078964..15083030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254767.1 → XP_030110627.1  spermatogenesis associated glutamate (E)-rich protein 4-like isoform X3

    Conserved Domains (1) summary
    pfam04822
    Location:9 → 43
    Takusan

  2. XM_017321073.2 → XP_017176562.1  spermatogenesis associated glutamate (E)-rich protein 4-like isoform X1

    Conserved Domains (1) summary
    pfam04822
    Location:50 → 130
    Takusan

  3. XM_006503599.4 → XP_006503662.1  spermatogenesis associated glutamate (E)-rich protein 4-like isoform X2

    Conserved Domains (1) summary
    pfam04822
    Location:50 → 122
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

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