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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050737.1 RefSeqGene
- Range
-
5050..91789
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001326542.2 → NP_001313471.1 transcription factor Sp4 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice junction in the 5' end compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AC004595, BF438799
- Consensus CDS
-
CCDS94063.1
- UniProtKB/TrEMBL
-
A0A3B3IRW4
- Related
- ENSP00000496957.1, ENST00000649633.1
- Conserved Domains (4) summary
-
- COG5048
Location:645 → 716
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:632 → 654
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:690 → 712
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:676 → 699
- zf-H2C2_2; Zinc-finger double domain
-
NM_001326543.2 → NP_001313472.1 transcription factor Sp4 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice junction in the 5' end compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AC004595, AK289728, BC109301, BF438799
- UniProtKB/Swiss-Prot
-
Q02446
- UniProtKB/TrEMBL
-
Q32M51
- Conserved Domains (4) summary
-
- sd00017
Location:336 → 358
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:394 → 416
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:380 → 403
- zf-H2C2_2; Zinc-finger double domain
- cl41773
Location:1 → 335
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
NM_003112.5 → NP_003103.2 transcription factor Sp4 isoform 1
See identical proteins and their annotated locations for NP_003103.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC004595, AK289728, BF438799
- Consensus CDS
-
CCDS5373.1
- UniProtKB/Swiss-Prot
- Q02446, Q32M52
- Related
- ENSP00000222584.3, ENST00000222584.8
- Conserved Domains (3) summary
-
- sd00017
Location:649 → 671
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:707 → 729
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:693 → 716
- zf-H2C2_2; Zinc-finger double domain
RNA
-
NR_137166.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 3' end compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
AC004595, AK289728, BF516188
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
21428083..21514822
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005249829.5 → XP_005249886.1 transcription factor Sp4 isoform X2
- Conserved Domains (2) summary
-
- sd00017
Location:649 → 671
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:677 → 701
- zf-C2H2; Zinc finger, C2H2 type
-
XM_011515486.3 → XP_011513788.1 transcription factor Sp4 isoform X1
- Conserved Domains (3) summary
-
- sd00017
Location:649 → 671
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:677 → 701
- zf-C2H2; Zinc finger, C2H2 type
- cd22536
Location:32 → 648
- SP4_N; N-terminal domain of transcription factor Specificity Protein (SP) 4
-
XM_017012557.2 → XP_016868046.1 transcription factor Sp4 isoform X3
-
XM_011515487.3 → XP_011513789.1 transcription factor Sp4 isoform X4
-
XM_047420760.1 → XP_047276716.1 transcription factor Sp4 isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
21564221..21650967
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)