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Samd1 sterile alpha motif domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 666704, updated on 11-Apr-2024

Summary

Official Symbol
Samd1provided by MGI
Official Full Name
sterile alpha motif domain containing 1provided by MGI
Primary source
MGI:MGI:2142433
See related
Ensembl:ENSMUSG00000079003 AllianceGenome:MGI:2142433
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and extracellular region. Predicted to be active in nucleus. Orthologous to human SAMD1 (sterile alpha motif domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 23.2), ovary adult (RPKM 17.8) and 28 other tissues See more
Orthologs
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Genomic context

See Samd1 in Genome Data Viewer
Location:
8 C2; 8 40.24 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84724145..84727044)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (83997516..84000415)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8943 Neighboring gene anti-silencing function 1B histone chaperone Neighboring gene STARR-positive B cell enhancer ABC_E361 Neighboring gene protein kinase, cAMP dependent, catalytic, alpha Neighboring gene STARR-seq mESC enhancer starr_22104 Neighboring gene RIKEN cDNA 1700067K01 gene Neighboring gene STARR-positive B cell enhancer ABC_E882 Neighboring gene microRNA 8111

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables low-density lipoprotein particle binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sterile alpha motif domain-containing protein 1
Names
SAM domain-containing protein 1
atherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081415.2NP_001074884.1  sterile alpha motif domain-containing protein 1

    See identical proteins and their annotated locations for NP_001074884.1

    Status: VALIDATED

    Source sequence(s)
    AC156028
    Consensus CDS
    CCDS40404.1
    UniProtKB/Swiss-Prot
    D3YXK1
    Related
    ENSMUSP00000092853.4, ENSMUST00000095228.5
    Conserved Domains (2) summary
    cd09583
    Location:440508
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    smart00454
    Location:440506
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    84724145..84727044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)