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Pantr2 POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 [ Mus musculus (house mouse) ]

Gene ID: 66620, updated on 23-Jul-2022

Summary

Official Symbol
Pantr2provided by MGI
Official Full Name
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2provided by MGI
Primary source
MGI:MGI:1913870
See related
AllianceGenome:MGI:1913870
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pou3f3os2; linc-Brn1b; 2610207O16Rik
Summary
Acts upstream of or within cerebellar cortex structural organization; homeostasis of number of cells within a tissue; and regulation of gene expression. Located in cytoplasm and nucleus. Is expressed in brain; cortical layer V; hippocampus CA1; lateral habenular nucleus; and medial habenular nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E11.5 (RPKM 6.2), CNS E14 (RPKM 5.0) and 7 other tissues See more
Orthologs
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Genomic context

See Pantr2 in Genome Data Viewer
Location:
1; 1 B
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (42746221..42752614, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (42707061..42713454, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene 20646 Neighboring gene RIKEN cDNA 2900092D14 gene Neighboring gene POU domain, class 3, transcription factor 3 Neighboring gene DNMT1 associated long intergenic non-coding RNA Neighboring gene predicted gene, 53552

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Other Names

  • POU domain, class 3, transcription factor 3, opposite strand 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110495.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122898

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    42746221..42752614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)