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Dzip1 DAZ interacting protein 1 [ Mus musculus (house mouse) ]

Gene ID: 66573, updated on 12-May-2024

Summary

Official Symbol
Dzip1provided by MGI
Official Full Name
DAZ interacting protein 1provided by MGI
Primary source
MGI:MGI:1914311
See related
Ensembl:ENSMUSG00000042156 AllianceGenome:MGI:1914311
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510025K24Rik; 2810422M04Rik
Summary
This gene encodes a zinc finger protein that has been demonstrated to interact with the deleted in azoospermia (DAZ) protein. DAZ plays an important role early in germ cell development to maintain the initial germ cell population. Deletion of this gene in mice compromises Hedgehog signaling during embryogenesis. Mouse embryos lacking the encoded protein show severe developmental defects with dorsalized neural tubes and underdeveloped somites. Alternative splicing of this gene results in multiple transcript variants. A pseudogene for this gene has been identified on chromosome 5. [provided by RefSeq, Jan 2015]
Expression
Broad expression in CNS E18 (RPKM 16.3), testis adult (RPKM 15.7) and 15 other tissues See more
Orthologs
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Genomic context

See Dzip1 in Genome Data Viewer
Location:
14 E4; 14 62.56 cM
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (119112927..119162947, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (118875517..118925537, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene claudin 10 Neighboring gene predicted gene, 41248 Neighboring gene predicted gene, 32382 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:119237797-119237998 Neighboring gene STARR-positive B cell enhancer ABC_E4125 Neighboring gene DnaJ heat shock protein family (Hsp40) member C3 Neighboring gene coiled-coil domain-containing protein 58 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:119381910-119382076 Neighboring gene STARR-positive B cell enhancer mm9_chr14:119406665-119406966 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene predicted gene, 16835

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables BBSome binding IDA
Inferred from Direct Assay
more info
PubMed 
enables BBSome binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in ciliary basal body organization ISO
Inferred from Sequence Orthology
more info
 
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cilium assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cilium organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cytoplasmic sequestering of protein IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within establishment of localization in cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within establishment of protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within maintenance of protein location in cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein localization to cilium IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein localization to cilium IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within protein localization to cilium IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein localization to organelle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein-containing complex localization to centriolar satellite ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of protein binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within smoothened signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in sperm flagellum assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in spermatogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
 
located_in centriole IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with centriole ISO
Inferred from Sequence Orthology
more info
 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
located_in ciliary basal body IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary base IDA
Inferred from Direct Assay
more info
PubMed 
part_of ciliary transition fiber IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear speck IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cilium assembly protein DZIP1
Names
DAZ-interacting protein 1 homolog
DAZ-interacting zinc finger protein 1
zinc finger protein DZIP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360411.1NP_001347340.1  cilium assembly protein DZIP1 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AA387689, AC154377, BC098211, BX525663, BY732624, CB244155, CB524461, CX769150
    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (3) summary
    TIGR02168
    Location:104437
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  2. NM_001360412.1NP_001347341.1  cilium assembly protein DZIP1 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AA387689, AC154377, BC098211, BX525663, BY732624, CB244155, CB524461, CX769150
    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  3. NM_001360413.1NP_001347342.1  cilium assembly protein DZIP1 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AA387689, AC154377, BC098211, BX525663, BY732624, CD806726
    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  4. NM_001427237.1NP_001414166.1  cilium assembly protein DZIP1 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC154377
    UniProtKB/Swiss-Prot
    Q4QQM0, Q6ZQ10, Q8BMD2, Q9CRK5
  5. NM_001427238.1NP_001414167.1  cilium assembly protein DZIP1 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AC154377
  6. NM_025943.3NP_080219.2  cilium assembly protein DZIP1 isoform 1

    See identical proteins and their annotated locations for NP_080219.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the protein.
    Source sequence(s)
    AC154377, BC098211, BX525663, BY296162, BY732624
    Consensus CDS
    CCDS37011.1
    UniProtKB/Swiss-Prot
    Q4QQM0, Q6ZQ10, Q8BMD2, Q9CRK5
    UniProtKB/TrEMBL
    Q3URS5
    Related
    ENSMUSP00000004055.9, ENSMUST00000004055.10
    Conserved Domains (3) summary
    TIGR02168
    Location:104438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal

RNA

  1. NR_130725.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks two exons in the 5' region and contains an alternate internal exon in the 3' region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC154377, BC098211, BX525663, BY732624
    Related
    ENSMUST00000228157.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    119112927..119162947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247933.2XP_030103793.1  cilium assembly protein DZIP1 isoform X1

    UniProtKB/Swiss-Prot
    Q4QQM0, Q6ZQ10, Q8BMD2, Q9CRK5
    UniProtKB/TrEMBL
    Q3URS5
    Related
    ENSMUSP00000039689.6, ENSMUST00000047208.12
    Conserved Domains (3) summary
    TIGR02168
    Location:104438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  2. XM_011245146.4XP_011243448.1  cilium assembly protein DZIP1 isoform X1

    See identical proteins and their annotated locations for XP_011243448.1

    UniProtKB/Swiss-Prot
    Q4QQM0, Q6ZQ10, Q8BMD2, Q9CRK5
    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (3) summary
    TIGR02168
    Location:104438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  3. XM_030247939.2XP_030103799.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  4. XM_030247936.2XP_030103796.1  cilium assembly protein DZIP1 isoform X4

    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (4) summary
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam17060
    Location:350444
    MPS2; Monopolar spindle protein 2
    pfam00096
    Location:183206
    zf-C2H2; Zinc finger, C2H2 type
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  5. XM_006519387.4XP_006519450.1  cilium assembly protein DZIP1 isoform X3

    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (5) summary
    TIGR02168
    Location:217510
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam17060
    Location:351445
    MPS2; Monopolar spindle protein 2
    pfam00096
    Location:183206
    zf-C2H2; Zinc finger, C2H2 type
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  6. XM_030247934.2XP_030103794.1  cilium assembly protein DZIP1 isoform X2

    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (3) summary
    TIGR02168
    Location:104437
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  7. XM_030247942.2XP_030103802.1  cilium assembly protein DZIP1 isoform X7

    Conserved Domains (1) summary
    pfam17060
    Location:122216
    MPS2; Monopolar spindle protein 2
  8. XM_036158794.1XP_036014687.1  cilium assembly protein DZIP1 isoform X7

    Conserved Domains (1) summary
    pfam17060
    Location:122216
    MPS2; Monopolar spindle protein 2
  9. XM_030247937.2XP_030103797.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  10. XM_030247943.2XP_030103803.1  cilium assembly protein DZIP1 isoform X7

    Conserved Domains (1) summary
    pfam17060
    Location:122216
    MPS2; Monopolar spindle protein 2
  11. XM_030247938.2XP_030103798.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  12. XM_036158793.1XP_036014686.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  13. XM_006519384.3XP_006519447.1  cilium assembly protein DZIP1 isoform X1

    See identical proteins and their annotated locations for XP_006519447.1

    UniProtKB/Swiss-Prot
    Q4QQM0, Q6ZQ10, Q8BMD2, Q9CRK5
    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (3) summary
    TIGR02168
    Location:104438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  14. XM_006519388.5XP_006519451.1  cilium assembly protein DZIP1 isoform X5

    See identical proteins and their annotated locations for XP_006519451.1

    Conserved Domains (1) summary
    pfam17060
    Location:159253
    MPS2; Monopolar spindle protein 2
  15. XM_030247940.2XP_030103800.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  16. XM_030247944.2XP_030103804.1  cilium assembly protein DZIP1 isoform X7

    Conserved Domains (1) summary
    pfam17060
    Location:122216
    MPS2; Monopolar spindle protein 2
  17. XM_030247941.2XP_030103801.1  cilium assembly protein DZIP1 isoform X6

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  18. XM_006519391.4XP_006519454.1  cilium assembly protein DZIP1 isoform X6

    See identical proteins and their annotated locations for XP_006519454.1

    UniProtKB/Swiss-Prot
    Q8BMD2
    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2
  19. XM_006519389.5XP_006519452.1  cilium assembly protein DZIP1 isoform X5

    See identical proteins and their annotated locations for XP_006519452.1

    Conserved Domains (1) summary
    pfam17060
    Location:159253
    MPS2; Monopolar spindle protein 2
  20. XM_006519386.4XP_006519449.1  cilium assembly protein DZIP1 isoform X2

    UniProtKB/TrEMBL
    Q3URS5
    Conserved Domains (3) summary
    TIGR02168
    Location:104437
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00018
    Location:183207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13815
    Location:43163
    Dzip-like_N; Iguana/Dzip1-like DAZ-interacting protein N-terminal
  21. XM_030247945.1XP_030103805.1  cilium assembly protein DZIP1 isoform X8

    Conserved Domains (1) summary
    pfam17060
    Location:123217
    MPS2; Monopolar spindle protein 2

RNA

  1. XR_383203.5 RNA Sequence

  2. XR_003950893.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025640.2: Suppressed sequence

    Description
    NM_025640.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.