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Cmss1 cms small ribosomal subunit 1 [ Mus musculus (house mouse) ]

Gene ID: 66497, updated on 26-Sep-2022

Summary

Official Symbol
Cmss1provided by MGI
Official Full Name
cms small ribosomal subunit 1provided by MGI
Primary source
MGI:MGI:1913747
See related
Ensembl:ENSMUSG00000022748 AllianceGenome:MGI:1913747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110001A06Rik; 2610528E23Rik; 4930572F24Rik
Summary
Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 4.8), CNS E11.5 (RPKM 3.0) and 28 other tissues See more
Orthologs
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Genomic context

See Cmss1 in Genome Data Viewer
Location:
16; 16 C1.1
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (57122362..57427230, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (57301999..57606867, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 16892 Neighboring gene TBC1 domain family, member 23 Neighboring gene transmembrane protein 30C Neighboring gene predicted gene, 26800 Neighboring gene RIKEN cDNA 4921517D16 gene Neighboring gene filamin A interacting protein 1-like Neighboring gene chaperonin containing Tcp1, subunit 8 (theta) pseudogene Neighboring gene predicted gene, 53930 Neighboring gene microRNA 1970b Neighboring gene collagen, type VIII, alpha 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
protein CMSS1
Names
cms1 ribosomal small subunit homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025599.3NP_079875.2  protein CMSS1

    See identical proteins and their annotated locations for NP_079875.2

    Status: VALIDATED

    Source sequence(s)
    AK012168, AK019979, AK136657
    Consensus CDS
    CCDS37365.1
    UniProtKB/Swiss-Prot
    Q9CY77, Q9CZT6
    UniProtKB/TrEMBL
    Q3UW28
    Related
    ENSMUSP00000110011.4, ENSMUST00000114371.5
    Conserved Domains (1) summary
    cl21455
    Location:105258
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    57122362..57427230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317115.3XP_017172604.1  protein CMSS1 isoform X2

    Conserved Domains (1) summary
    cl28899
    Location:73226
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
  2. XM_006522459.5XP_006522522.1  protein CMSS1 isoform X1

    Conserved Domains (1) summary
    cl28899
    Location:108261
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
  3. XM_011245995.4XP_011244297.1  protein CMSS1 isoform X2

    See identical proteins and their annotated locations for XP_011244297.1

    Conserved Domains (1) summary
    cl28899
    Location:73226
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
  4. XM_006522460.3XP_006522523.1  protein CMSS1 isoform X2

    See identical proteins and their annotated locations for XP_006522523.1

    Conserved Domains (1) summary
    cl28899
    Location:73226
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily