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id4 inhibitor of DNA binding 4 [ Danio rerio (zebrafish) ]

Gene ID: 664761, updated on 3-Oct-2019

Summary

Official Symbol
id4provided by ZNC
Official Full Name
inhibitor of DNA binding 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-051113-208
See related
Ensembl:ENSDARG00000045131
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb547; fb77d04; sb:cb547; wu:fb77d04; zgc:123214
Orthologs

Genomic context

See id4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (9977858..9980799, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (10086956..10089897, complement)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (11571906..11574847, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene grainyhead-like transcription factor 2a Neighboring gene neurocalcin delta a Neighboring gene uncharacterized LOC110437969 Neighboring gene uncharacterized LOC103908901

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Id Signaling Pathway, organism-specific biosystem (from WikiPathways)
    Id Signaling Pathway, organism-specific biosystemInhibitor of DNA binding (ID) proteins are members of the helix-loop-helix (HLH) family of proteins which lack a DNA binding domain themselves but bind to other family members inhibiting their DNA bi...
  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General gene information

Markers

Homology

Clone Names

  • MGC123214

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
atrioventricular canal development IMP
Inferred from Mutant Phenotype
more info
PubMed 
atrioventricular valve development IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of Wnt signaling pathway involved in heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-binding protein inhibitor ID-4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039990.1NP_001035079.1  DNA-binding protein inhibitor ID-4

    See identical proteins and their annotated locations for NP_001035079.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108045
    UniProtKB/TrEMBL
    Q32PN8
    Related
    ENSDARP00000066371.5, ENSDART00000066372.6
    Conserved Domains (1) summary
    smart00353
    Location:4386
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    9977858..9980799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173489.1XP_005173546.1  DNA-binding protein inhibitor ID-4 isoform X1

    Conserved Domains (1) summary
    smart00353
    Location:4386
    HLH; helix loop helix domain
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