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Slc6a19 solute carrier family 6 member 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 664630, updated on 2-Oct-2018

Summary

Official Symbol
Slc6a19provided by RGD
Official Full Name
solute carrier family 6 member 19provided by RGD
Primary source
RGD:1594328
See related
Ensembl:ENSRNOG00000026501
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
B0at1
Expression
Restricted expression toward (RPKM 528.0) See more
Orthologs

Genomic context

See Slc6a19 in Genome Data Viewer
Location:
1p11
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (32199869..32218628)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (33624561..33643496)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene naked cuticle homolog 2 Neighboring gene solute carrier family 12 member 7 Neighboring gene solute carrier family 6 member 18 Neighboring gene RNA polymerase II transcriptional coactivator-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
neurotransmitter:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 
neutral amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neutral amino acid transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
neutral amino acid transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 
neutral amino acid transport IEA
Inferred from Electronic Annotation
more info
 
neutral amino acid transport ISO
Inferred from Sequence Orthology
more info
 
response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
apical plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
brush border membrane IEA
Inferred from Electronic Annotation
more info
 
brush border membrane ISO
Inferred from Sequence Orthology
more info
 
cellular_component ND
No biological Data available
more info
 
integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
sodium-dependent neutral amino acid transporter B(0)AT1
Names
b(0)AT1
neutral amino acid transporter
solute carrier family 6 (neurotransmitter transporter), member 19
solute carrier family 6 (neutral amino acid transporter), member 19
system B(0) neutral amino acid transporter AT1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039722.2NP_001034811.1  sodium-dependent neutral amino acid transporter B(0)AT1

    See identical proteins and their annotated locations for NP_001034811.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ890206
    UniProtKB/Swiss-Prot
    Q2A865
    Related
    ENSRNOP00000028917.2, ENSRNOT00000036714.3
    Conserved Domains (1) summary
    cl00456
    Location:32612
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    32199869..32218628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    28234184..28252964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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