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Slc7a6os solute carrier family 7, member 6 opposite strand [ Mus musculus (house mouse) ]

Gene ID: 66432, updated on 24-Jan-2023

Summary

Official Symbol
Slc7a6osprovided by MGI
Official Full Name
solute carrier family 7, member 6 opposite strandprovided by MGI
Primary source
MGI:MGI:1916951
See related
Ensembl:ENSMUSG00000033106 AllianceGenome:MGI:1916951
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010007L18Rik; 2400002F02Rik
Summary
Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including adrenal gland; early embryo; genitourinary system; liver; and spleen. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SLC7A6OS (solute carrier family 7 member 6 opposite strand). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 15.5), limb E14.5 (RPKM 13.6) and 28 other tissues See more
Orthologs
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Genomic context

See Slc7a6os in Genome Data Viewer
Location:
8; 8 D3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106927070..106937565, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (106200438..106210933, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene phospholipase A2, group XV Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 Neighboring gene protein arginine N-methyltransferase 7 Neighboring gene sphingomyelin phosphodiesterase 3, neutral Neighboring gene RIKEN cDNA 4930506A18 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC60796

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in developmental process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
probable RNA polymerase II nuclear localization protein SLC7A6OS
Names
protein SLC7A6OS
solute carrier family 7 member 6 opposite strand transcript homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007567.2NP_001007568.1  probable RNA polymerase II nuclear localization protein SLC7A6OS

    See identical proteins and their annotated locations for NP_001007568.1

    Status: VALIDATED

    Source sequence(s)
    AC133195, AK146733
    Consensus CDS
    CCDS22632.1
    UniProtKB/Swiss-Prot
    Q7TPE5
    Related
    ENSMUSP00000039029.6, ENSMUST00000035925.7
    Conserved Domains (1) summary
    pfam08574
    Location:191255
    DUF1762; Protein of unknown function (DUF1762)

RNA

  1. NR_152744.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133195

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    106927070..106937565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)