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Srp19 signal recognition particle 19 [ Mus musculus (house mouse) ]

Gene ID: 66384, updated on 17-Nov-2020

Summary

Official Symbol
Srp19provided by MGI
Official Full Name
signal recognition particle 19provided by MGI
Primary source
MGI:MGI:1913634
See related
Ensembl:ENSMUSG00000014504
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310020D23Rik
Expression
Broad expression in placenta adult (RPKM 36.3), liver E14 (RPKM 32.8) and 24 other tissues See more
Orthologs

Genomic context

See Srp19 in Genome Data Viewer
Location:
18; 18 B1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (34464185..34469652)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (34331121..34336599)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34490799..34496253)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L29 pseudogene Neighboring gene APC, WNT signaling pathway regulator Neighboring gene uncharacterized LOC118568351 Neighboring gene receptor accessory protein 5 Neighboring gene polycystic kidney disease 2-like 2 Neighboring gene SET translocation pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
7S RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
7S RNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to ribosome binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
signal recognition particle ISO
Inferred from Sequence Orthology
more info
 
signal recognition particle, endoplasmic reticulum targeting IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
signal recognition particle, endoplasmic reticulum targeting ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
signal recognition particle 19 kDa protein
NP_079803.2
XP_006526218.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025527.3NP_079803.2  signal recognition particle 19 kDa protein

    See identical proteins and their annotated locations for NP_079803.2

    Status: VALIDATED

    Source sequence(s)
    AK004118, BX529045
    Consensus CDS
    CCDS37757.1
    UniProtKB/TrEMBL
    Q9D104
    Related
    ENSMUSP00000072386.3, ENSMUST00000072576.9
    Conserved Domains (1) summary
    pfam01922
    Location:17115
    SRP19; SRP19 protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    34464185..34469652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526155.2XP_006526218.1  signal recognition particle 19 kDa protein isoform X1

    See identical proteins and their annotated locations for XP_006526218.1

    UniProtKB/TrEMBL
    G5E8T3
    Related
    ENSMUSP00000112826.1
    Conserved Domains (1) summary
    pfam01922
    Location:1791
    SRP19; SRP19 protein
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