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LOC6636600 histone deacetylase HDAC1 [ Drosophila virilis ]

Gene ID: 6636600, updated on 25-Jan-2024

Summary

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Gene symbol
LOC6636600
Gene description
histone deacetylase HDAC1
Locus tag
Dvir_GJ15512
See related
EnsemblRapid:LOC6636600
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
Rpd3; GJ15512; Rpd3-PA; Dvir\Rpd3; GJ15512-PA
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Genomic context

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See LOC6636600 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587565.1 (1111308..1115051)

NW_022587565.1Genomic Context describing neighboring genes Neighboring gene band 7 protein AGAP004871 Neighboring gene tyrosine-protein kinase Src64B Neighboring gene uncharacterized LOC116650805 Neighboring gene contactin-associated protein-like 2 Neighboring gene uncharacterized LOC6636602 Neighboring gene probable tubulin polyglutamylase TTLL1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587565 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rapid evolution of a few members of nasuta-albomicans complex of Drosophila: study on two candidate genes, Sod1 and Rpd3. Ranjini MS, et al. J Mol Evol, 2013 May. PMID 23619741
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase HDAC1
Names
Dvir\GJ15512
Dvir\GJ15512-PA
Dvir\Rpd3-PA
dvir_GLEANR_15935

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587565.1 Reference DvirRS2

    Range
    1111308..1115051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002060001.3 → XP_002060037.1  histone deacetylase HDAC1

    See identical proteins and their annotated locations for XP_002060037.1

    UniProtKB/TrEMBL
    B4MFY7
    Related
    XP_002060037.1, XM_002060001.3
    Conserved Domains (2) summary
    PTZ00063
    Location:6 → 396
    PTZ00063; histone deacetylase; Provisional
    cl17011
    Location:5 → 372
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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