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Snw1 SNW domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66354, updated on 31-Jan-2019

Summary

Official Symbol
Snw1provided by MGI
Official Full Name
SNW domain containing 1provided by MGI
Primary source
MGI:MGI:1913604
See related
Ensembl:ENSMUSG00000021039
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SKIP; Skiip; NCoA-62; AW048543; 2310008B08Rik
Expression
Broad expression in CNS E11.5 (RPKM 29.9), bladder adult (RPKM 19.2) and 23 other tissues See more
Orthologs

Genomic context

See Snw1 in Genome Data Viewer
Location:
12; 12 D2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (87449910..87472299, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (88790860..88813249, complement)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene microRNA 3068 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene neural regeneration protein Neighboring gene RNA exonuclease 1 homolog pseudogene Neighboring gene GLE1 RNA export mediator pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC55033

Gene Ontology Provided by MGI

Function Evidence Code Pubs
Notch binding ISO
Inferred from Sequence Orthology
more info
 
SMAD binding ISO
Inferred from Sequence Orthology
more info
 
androgen receptor binding ISO
Inferred from Sequence Orthology
more info
 
enzyme binding ISO
Inferred from Sequence Orthology
more info
 
nuclear hormone receptor binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
retinoic acid receptor binding ISO
Inferred from Sequence Orthology
more info
 
transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
transcription corepressor activity ISO
Inferred from Sequence Orthology
more info
 
vitamin D receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
cellular response to retinoic acid IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to retinoic acid ISO
Inferred from Sequence Orthology
more info
 
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator ISO
Inferred from Sequence Orthology
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation by host of viral transcription ISO
Inferred from Sequence Orthology
more info
 
positive regulation of histone H3-K4 methylation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
positive regulation of neurogenesis IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transforming growth factor beta receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
positive regulation of vitamin D receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
regulation of retinoic acid receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
regulation of vitamin D receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
retinoic acid receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
skeletal muscle cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
SMAD protein complex ISO
Inferred from Sequence Orthology
more info
 
U2-type catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
chromatin ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with cyclin/CDK positive transcription elongation factor complex ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nuclear body ISO
Inferred from Sequence Orthology
more info
 
nuclear matrix ISO
Inferred from Sequence Orthology
more info
 
nuclear speck ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
SNW domain-containing protein 1
Names
SKI interacting protein
nuclear protein SkiP
ski-interacting protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025507.2NP_079783.2  SNW domain-containing protein 1

    See identical proteins and their annotated locations for NP_079783.2

    Status: VALIDATED

    Source sequence(s)
    AK009218, AK012384, AK166163
    Consensus CDS
    CCDS49121.1
    UniProtKB/Swiss-Prot
    Q9CSN1
    UniProtKB/TrEMBL
    A0A0B4J1E2, Q3TM37, Q9CV75
    Related
    ENSMUSP00000021428.7, ENSMUST00000021428.8
    Conserved Domains (1) summary
    pfam02731
    Location:178334
    SKIP_SNW; SKIP/SNW domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

    Range
    87449910..87472299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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