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Mrps16 mitochondrial ribosomal protein S16 [ Mus musculus (house mouse) ]

Gene ID: 66242, updated on 5-Mar-2024

Summary

Official Symbol
Mrps16provided by MGI
Official Full Name
mitochondrial ribosomal protein S16provided by MGI
Primary source
MGI:MGI:1913492
See related
Ensembl:ENSMUSG00000049960 AllianceGenome:MGI:1913492
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
S16mt; Mprs16; 1500011E11Rik
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including central nervous system; early conceptus; gonad; liver; and retina. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Orthologous to human MRPS16 (mitochondrial ribosomal protein S16). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 80.7), kidney adult (RPKM 66.0) and 28 other tissues See more
Orthologs
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Genomic context

See Mrps16 in Genome Data Viewer
Location:
14 A3; 14 11.53 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20441290..20443702, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20391222..20393634, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149, member B Neighboring gene predicted gene, 30054 Neighboring gene STARR-positive B cell enhancer ABC_E7296 Neighboring gene STARR-positive B cell enhancer ABC_E11564 Neighboring gene STARR-positive B cell enhancer ABC_E3105 Neighboring gene DnaJ heat shock protein family (Hsp40) member C9 Neighboring gene RIKEN cDNA 7330404K18 gene Neighboring gene cilia and flagella associated protein 70 Neighboring gene STARR-seq mESC enhancer starr_36110 Neighboring gene annexin A7

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of mitochondrial small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
part_of mitochondrial small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small ribosomal subunit protein bS16m
Names
28S ribosomal protein S16, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025440.3NP_079716.1  small ribosomal subunit protein bS16m precursor

    See identical proteins and their annotated locations for NP_079716.1

    Status: VALIDATED

    Source sequence(s)
    AC121801, AK005206, BY108330
    Consensus CDS
    CCDS36817.1
    UniProtKB/Swiss-Prot
    Q9CPX7
    Related
    ENSMUSP00000055619.4, ENSMUST00000061444.5
    Conserved Domains (1) summary
    TIGR00002
    Location:1797
    S16; ribosomal protein S16

RNA

  1. NR_155747.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121801
    Related
    ENSMUST00000224286.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    20441290..20443702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)