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Pithd1 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66193, updated on 31-Jan-2019

Summary

Official Symbol
Pithd1provided by MGI
Official Full Name
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1provided by MGI
Primary source
MGI:MGI:1913443
See related
Ensembl:ENSMUSG00000028669
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Trp26; AA408179; 1110049F12Rik
Expression
Ubiquitous expression in thymus adult (RPKM 52.8), colon adult (RPKM 47.2) and 28 other tissues See more
Orthologs

Genomic context

See Pithd1 in Genome Data Viewer
Location:
4; 4 D3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (135975602..135987244, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (135531517..135543159, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene galactose-4-epimerase, UDP Neighboring gene lysophospholipase 2 Neighboring gene predicted gene 13007 Neighboring gene elongin A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
PITH domain-containing protein 1
Names
AD039
thioredoxin family Trp26

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025411.4NP_079687.3  PITH domain-containing protein 1

    See identical proteins and their annotated locations for NP_079687.3

    Status: VALIDATED

    Source sequence(s)
    BC052695, BY044314
    Consensus CDS
    CCDS51330.1
    UniProtKB/Swiss-Prot
    Q8BWR2
    Related
    ENSMUSP00000101477.2, ENSMUST00000105851.8
    Conserved Domains (1) summary
    pfam06201
    Location:31175
    PITH; PITH domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    135975602..135987244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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