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Chchd5 coiled-coil-helix-coiled-coil-helix domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 66170, updated on 2-Apr-2024

Summary

Official Symbol
Chchd5provided by MGI
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 5provided by MGI
Primary source
MGI:MGI:1913420
See related
Ensembl:ENSMUSG00000037938 AllianceGenome:MGI:1913420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110027L01Rik
Summary
Predicted to be located in mitochondrion. Is expressed in orbito-sphenoid and turbinate bone primordium. Orthologous to human CHCHD5 (coiled-coil-helix-coiled-coil-helix domain containing 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 37.7), liver adult (RPKM 19.0) and 28 other tissues See more
Orthologs
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Genomic context

See Chchd5 in Genome Data Viewer
Location:
2 F1; 2 62.72 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (128971620..128976032)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (129129700..129134112)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase Neighboring gene predicted gene, 46764 Neighboring gene polymerase (RNA) I polypeptide B Neighboring gene SET domain containing 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_05661 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:129005758-129006030 Neighboring gene expressed sequence AI847159

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cellular respiration IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in mitochondrial intermembrane space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025395.3NP_079671.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 5

    See identical proteins and their annotated locations for NP_079671.1

    Status: VALIDATED

    Source sequence(s)
    AK013018, BB792161, BY335381, W41426
    Consensus CDS
    CCDS16721.1
    UniProtKB/Swiss-Prot
    Q9CQP3
    UniProtKB/TrEMBL
    Q52KC5
    Related
    ENSMUSP00000044253.5, ENSMUST00000035481.5
    Conserved Domains (2) summary
    pfam06747
    Location:5892
    CHCH; CHCH domain
    pfam16860
    Location:849
    CX9C; CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    128971620..128976032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)