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Znrd1 zinc ribbon domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66136, updated on 24-Oct-2019

Summary

Official Symbol
Znrd1provided by MGI
Official Full Name
zinc ribbon domain containing 1provided by MGI
Primary source
MGI:MGI:1913386
See related
Ensembl:ENSMUSG00000036315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rpa12; 1110014N07Rik
Expression
Ubiquitous expression in limb E14.5 (RPKM 18.1), CNS E11.5 (RPKM 17.7) and 28 other tissues See more
Orthologs

Genomic context

See Znrd1 in Genome Data Viewer
Location:
17; 17 B1
Exon count:
4
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36954358..36958525, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (37091303..37095373, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 39 Neighboring gene predicted gene, 33595 Neighboring gene protein phosphatase 1, regulatory inhibitor subunit 11 Neighboring gene zinc ribbon domain containing 1, antisense Neighboring gene histocompatibility 2, M region locus 6, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to DNA-directed 5'-3' RNA polymerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA cleavage IEA
Inferred from Electronic Annotation
more info
 
termination of RNA polymerase I transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-directed RNA polymerase I subunit RPA12
Names
nuclear RNA polymerase I small specific subunit
zinc ribbon domain-containing protein 1
NP_001342351.1
NP_075651.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355422.1NP_001342351.1  DNA-directed RNA polymerase I subunit RPA12

    Status: VALIDATED

    Source sequence(s)
    CR956641
    Consensus CDS
    CCDS28730.1
    Related
    ENSMUSP00000133651.1, ENSMUST00000172518.7
    Conserved Domains (2) summary
    cd10507
    Location:76122
    Zn-ribbon_RPA12; C-terminal zinc ribbon domain of RPA12 subunit of RNA polymerase I
    cl27574
    Location:1746
    OrfB_Zn_ribbon; Putative transposase DNA-binding domain
  2. NM_023162.4NP_075651.1  DNA-directed RNA polymerase I subunit RPA12

    See identical proteins and their annotated locations for NP_075651.1

    Status: VALIDATED

    Source sequence(s)
    AK003714
    Consensus CDS
    CCDS28730.1
    UniProtKB/Swiss-Prot
    Q791N7
    Related
    ENSMUSP00000109299.2, ENSMUST00000113669.8
    Conserved Domains (2) summary
    cd10507
    Location:76122
    Zn-ribbon_RPA12; C-terminal zinc ribbon domain of RPA12 subunit of RNA polymerase I
    cl27574
    Location:1746
    OrfB_Zn_ribbon; Putative transposase DNA-binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p6 C57BL/6J

    Range
    36954358..36958525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 129S1/SvImJ

Genomic

  1. NT_187009.1 Reference GRCm38.p6 129S1/SvImJ

    Range
    909169..913338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 NOD/MrkTac

Genomic

  1. NT_187027.1 Reference GRCm38.p6 NOD/MrkTac

    Range
    3239812..3243964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 NOD/ShiLtJ

Genomic

  1. NT_187004.1 Reference GRCm38.p6 NOD/ShiLtJ

    Range
    3315453..3319605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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