U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chchd1 coiled-coil-helix-coiled-coil-helix domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66121, updated on 8-Dec-2022

Summary

Official Symbol
Chchd1provided by MGI
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 1provided by MGI
Primary source
MGI:MGI:1913371
See related
Ensembl:ENSMUSG00000063787 AllianceGenome:MGI:1913371
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MRP-S37; 1110001O19Rik; 2400010G13Rik
Summary
Predicted to be involved in mitochondrial translation. Located in mitochondrion. Orthologous to human CHCHD1 (coiled-coil-helix-coiled-coil-helix domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 43.0), placenta adult (RPKM 40.7) and 27 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Chchd1 in Genome Data Viewer
Location:
14; 14 A3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20753095..20754493)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20703027..20704425)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 11 Neighboring gene RIKEN cDNA 6230400D17 gene Neighboring gene predicted gene, 25328 Neighboring gene zinc finger SWIM-type containing 8 Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC106657

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in fibrillar center ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrial ribosome IEA
Inferred from Electronic Annotation
more info
 
part_of mitochondrial small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Names
28S ribosomal protein S37, mitochondrial

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025366.3NP_079642.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 1

    See identical proteins and their annotated locations for NP_079642.1

    Status: VALIDATED

    Source sequence(s)
    AV460497, BC052720
    Consensus CDS
    CCDS26852.1
    UniProtKB/Swiss-Prot
    Q56A12, Q9CQA6
    UniProtKB/TrEMBL
    A0A8C6GPI4
    Related
    ENSMUSP00000071202.4, ENSMUST00000071215.5
    Conserved Domains (1) summary
    pfam06747
    Location:4576
    CHCH; CHCH domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    20753095..20754493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)