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Cep20 centrosomal protein 20 [ Mus musculus (house mouse) ]

Gene ID: 66086, updated on 17-Dec-2020

Summary

Official Symbol
Cep20provided by MGI
Official Full Name
centrosomal protein 20provided by MGI
Primary source
MGI:MGI:1913336
See related
Ensembl:ENSMUSG00000022677
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
F; Fopnl; 0610037P05Rik
Expression
Ubiquitous expression in testis adult (RPKM 10.8), genital fat pad adult (RPKM 9.9) and 28 other tissues See more
Orthologs
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Genomic context

See Cep20 in Genome Data Viewer
Location:
16; 16 A1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (14117105..14136093, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (14299241..14318229, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (14299337..14317425, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene nudE neurodevelopment protein 1 Neighboring gene myosin, heavy polypeptide 11, smooth muscle Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 1 Neighboring gene predicted gene, 23116 Neighboring gene RIKEN cDNA A630010A05 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cell projection organization IEA
Inferred from Electronic Annotation
more info
 
cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cilium assembly ISO
Inferred from Sequence Orthology
more info
 
microtubule anchoring IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
centriolar satellite ISO
Inferred from Sequence Orthology
more info
 
centrosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centrosome ISO
Inferred from Sequence Orthology
more info
 
ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
centrosomal protein 20
Names
FGFR1OP N-terminal-like protein
FOP-related protein of 20 kDa
Fgfr1op N-terminal like
lisH domain-containing protein C16orf63 homolog
lisH domain-containing protein FOPNL

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025345.2NP_079621.1  centrosomal protein 20

    See identical proteins and their annotated locations for NP_079621.1

    Status: PROVISIONAL

    Source sequence(s)
    BC011300
    Consensus CDS
    CCDS27973.1
    UniProtKB/Swiss-Prot
    Q9CZS3
    Related
    ENSMUSP00000023357.7, ENSMUST00000023357.13
    Conserved Domains (1) summary
    pfam09398
    Location:43113
    FOP_dimer; FOP N terminal dimerization domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    14117105..14136093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522450.4XP_006522513.1  centrosomal protein 20 isoform X1

    Conserved Domains (1) summary
    cl29685
    Location:347
    LisH_2
  2. XM_017317110.2XP_017172599.1  centrosomal protein 20 isoform X2

    Conserved Domains (1) summary
    cl29685
    Location:4398
    LisH_2

RNA

  1. XR_001781849.2 RNA Sequence

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