Format

Send to:

Choose Destination

Fopnl Fgfr1op N-terminal like [ Mus musculus (house mouse) ]

Gene ID: 66086, updated on 31-Jan-2019

Summary

Official Symbol
Fopnlprovided by MGI
Official Full Name
Fgfr1op N-terminal likeprovided by MGI
Primary source
MGI:MGI:1913336
See related
Ensembl:ENSMUSG00000022677
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
0610037P05Rik
Expression
Ubiquitous expression in testis adult (RPKM 10.8), genital fat pad adult (RPKM 9.9) and 28 other tissues See more
Orthologs

Genomic context

See Fopnl in Genome Data Viewer
Location:
16; 16 A1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (14299241..14318086, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (14299337..14317425, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene nudE neurodevelopment protein 1 Neighboring gene myosin, heavy polypeptide 11, smooth muscle Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 1 Neighboring gene RIKEN cDNA A630010A05 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cell projection organization IEA
Inferred from Electronic Annotation
more info
 
cilium assembly ISO
Inferred from Sequence Orthology
more info
 
microtubule anchoring IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
centriolar satellite ISO
Inferred from Sequence Orthology
more info
 
centrosome ISO
Inferred from Sequence Orthology
more info
 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
lisH domain-containing protein FOPNL
Names
FGFR1OP N-terminal-like protein
FOP-related protein of 20 kDa
lisH domain-containing protein C16orf63 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025345.2NP_079621.1  lisH domain-containing protein FOPNL

    See identical proteins and their annotated locations for NP_079621.1

    Status: PROVISIONAL

    Source sequence(s)
    BC011300
    Consensus CDS
    CCDS27973.1
    UniProtKB/Swiss-Prot
    Q9CZS3
    Related
    ENSMUSP00000023357.7, ENSMUST00000023357.13
    Conserved Domains (1) summary
    pfam09398
    Location:43113
    FOP_dimer; FOP N terminal dimerization domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    14299241..14318086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522450.3XP_006522513.1  lisH domain-containing protein FOPNL isoform X1

    Conserved Domains (1) summary
    pfam09398
    Location:347
    FOP_dimer; FOP N terminal dimerization domain
  2. XM_017317110.1XP_017172599.1  lisH domain-containing protein FOPNL isoform X2

    Conserved Domains (1) summary
    pfam09398
    Location:4398
    FOP_dimer; FOP N terminal dimerisation domain

RNA

  1. XR_001781849.1 RNA Sequence

Support Center