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ZFTA zinc finger translocation associated [ Homo sapiens (human) ]

Gene ID: 65998, updated on 29-Mar-2023

Summary

Official Symbol
ZFTAprovided by HGNC
Official Full Name
zinc finger translocation associatedprovided by HGNC
Primary source
HGNC:HGNC:28449
See related
Ensembl:ENSG00000188070 MIM:615699; AllianceGenome:HGNC:28449
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf95
Summary
Predicted to be involved in negative regulation of transcription, DNA-templated. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary (RPKM 10.0), endometrium (RPKM 8.7) and 25 other tissues See more
Orthologs
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Genomic context

See ZFTA in Genome Data Viewer
Location:
11q13.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (63759892..63768775, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (63749259..63758142, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (63527364..63536247, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene atlastin GTPase 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:63438715-63439214 Neighboring gene reticulon 3 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:63529087-63529846 Neighboring gene RNA, 7SL, cytoplasmic 596, pseudogene Neighboring gene Sharpr-MPRA regulatory region 949

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Clone Names

  • MGC3032

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger translocation-associated protein
Names
uncharacterized protein C11orf95

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144936.2NP_001138408.1  zinc finger translocation-associated protein

    See identical proteins and their annotated locations for NP_001138408.1

    Status: VALIDATED

    Source sequence(s)
    AP006289
    Consensus CDS
    CCDS44636.1
    UniProtKB/Swiss-Prot
    C9JLR9, Q3C1V4
    Related
    ENSP00000482180.1, ENST00000433688.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    63759892..63768775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024448662.2XP_024304430.1  zinc finger translocation-associated protein isoform X3

  2. XM_047427477.1XP_047283433.1  zinc finger translocation-associated protein isoform X1

  3. XM_047427478.1XP_047283434.1  zinc finger translocation-associated protein isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    63749259..63758142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054369723.1XP_054225698.1  zinc finger translocation-associated protein isoform X3

  2. XM_054369721.1XP_054225696.1  zinc finger translocation-associated protein isoform X1

  3. XM_054369722.1XP_054225697.1  zinc finger translocation-associated protein isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_023941.1: Suppressed sequence

    Description
    NM_023941.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.