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Fer2 48 related 2 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 659917, updated on 10-May-2024

Summary

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Gene symbol
Fer2
Gene description
48 related 2
Locus tag
TcasGA2_TC013785
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See Fer2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (11242111..11245865)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (4153383..4157371, complement)

Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene p23 Neighboring gene Nostrin Neighboring gene canoe Neighboring gene transmembrane protein 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helix-loop-helix protein 13; uncharacterized protein Fer2
Names
AUGUSTUS-3.0.2_13785
GLEAN_13785
Helix-loop-helix protein 13-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

    Range
    11242111..11245865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015979928.2 → XP_015835414.1  uncharacterized protein Fer2 isoform X1

    Conserved Domains (1) summary
    pfam00010
    Location:88 → 148
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_015979929.2 → XP_015835415.1  helix-loop-helix protein 13 isoform X2

    Conserved Domains (1) summary
    pfam00010
    Location:88 → 147
    HLH; Helix-loop-helix DNA-binding domain

  3. XM_008194816.3 → XP_008193038.1  helix-loop-helix protein 13 isoform X3

    UniProtKB/TrEMBL
    D6WJF3
    Conserved Domains (1) summary
    pfam00010
    Location:88 → 141
    HLH; Helix-loop-helix DNA-binding domain

  4. XM_015979930.2 → XP_015835416.1  helix-loop-helix protein 13 isoform X4

    Conserved Domains (1) summary
    pfam00010
    Location:88 → 140
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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