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LOC659297 atonal [ Tribolium castaneum (red flour beetle) ]

Gene ID: 659297, updated on 18-Apr-2026
Gene symbol
LOC659297
Gene description
atonal
Locus tag
TcasGA2_TC011336
See related
EnsemblRapid:LOC659297
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Altocrustacea; Allotriocarida; Hexapoda; Insecta; Pterygota; Neoptera; Eumetabola; Endopterygota; Aparaglossata; Neuropteroidea; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
ato
Orthologs
all
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See LOC659297 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 7 NC_087400.1 (4552057..4552935, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG10 NC_007425.3 (3871936..3872660)

Chromosome 7 - NC_087400.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC659500 Neighboring gene uncharacterized LOC103314415 Neighboring gene surfeit locus protein 6 homolog Neighboring gene odorant receptor Or1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables E-box binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein atonal
Names
AUGUSTUS-3.0.2_11336
GLEAN_11336

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087400.1 Reference icTriCast1.1 Primary Assembly

    Range
    4552057..4552935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_965616.4 → XP_970709.2  protein atonal

    UniProtKB/TrEMBL
    D6X416
    Related
    XP_970709.2, XM_965616.4
    Conserved Domains (1) summary
    cd00083
    Location:74 → 131
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein Strain
Heading Accession and Version

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