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LOC6568817 protein Rae1 [ Drosophila grimshawi ]

Gene ID: 6568817, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6568817
Gene description
protein Rae1
Locus tag
Dgri_GH23041
See related
EnsemblRapid:LOC6568817
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH23041; GH23041-PA
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Genomic context

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See LOC6568817 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (1198350..1199661, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961681.1 (2838709..2840020)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene protein Aster-B Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 Neighboring gene uncharacterized LOC6568816 Neighboring gene phosphatidylinositol 4,5-bisphosphate 5-phosphatase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Rae1
Names
Dgri\GH23041
Dgri\GH23041-PA
dgri_GLEANR_7342
mRNA export factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    1198350..1199661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001995201.2 → XP_001995237.1  protein Rae1

    See identical proteins and their annotated locations for XP_001995237.1

    UniProtKB/TrEMBL
    B4JWH1
    Related
    XP_001995237.1, XM_001995201.2
    Conserved Domains (3) summary
    COG2319
    Location:19 → 311
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:25 → 68
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:23 → 311
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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