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slbo slow border cells [ Tribolium castaneum (red flour beetle) ]

Gene ID: 655869, updated on 2-Apr-2025
Gene symbol
slbo
Gene description
slow border cells
Locus tag
TcasGA2_TC009220
See related
EnsemblRapid:GeneID_655869
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
all
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See slbo in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (21785611..21787585)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (3028422..3030387, complement)

Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene Fatty acid transport protein 3 Neighboring gene Actin-related protein 5 Neighboring gene uncharacterized LOC107398170 Neighboring gene uncharacterized LOC107398169

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
CCAAT/enhancer-binding protein
Names
AUGUSTUS-3.0.2_09220
CCAAT/enhancer-binding protein epsilon-like Protein
GLEAN_09220

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

    Range
    21785611..21787585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_962431.5 → XP_967524.1  CCAAT/enhancer-binding protein

    UniProtKB/TrEMBL
    D6WSV6
    Related
    XP_967524.1, XM_962431.5
    Conserved Domains (1) summary
    cd14693
    Location:227 → 286
    bZIP_CEBP; Basic leucine zipper (bZIP) domain of CCAAT/enhancer-binding protein (CEBP) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein Strain
Heading Accession and Version

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