U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

trh PAS domain-containing protein trachealess [ Tribolium castaneum (red flour beetle) ]

Gene ID: 655476, updated on 18-Apr-2026
Gene symbol
trh
Gene description
PAS domain-containing protein trachealess
See related
EnsemblRapid:GeneID_655476
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Altocrustacea; Allotriocarida; Hexapoda; Insecta; Pterygota; Neoptera; Eumetabola; Endopterygota; Aparaglossata; Neuropteroidea; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See trh in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (4368980..4423560, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (3770452..3783885, complement)

Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene Semaphorin 5c Neighboring gene Actin-related protein 8 Neighboring gene klarsicht Neighboring gene RUN domain-containing protein 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein trachealess
Names
AUGUSTUS-3.0.2_01448
GLEAN_01446
GLEAN_01447
GLEAN_01448
trachealess

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

    Range
    4368980..4423560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064359282.1 → XP_064215352.1  protein trachealess isoform X1

    UniProtKB/TrEMBL
    A0A139WNU4
    Related
    XP_064215352.1, XM_064359282.1

  2. XM_015980543.2 → XP_015836029.1  protein trachealess isoform X2

    UniProtKB/TrEMBL
    A0A139WNU4
    Related
    XP_015836029.1, XM_015980543.2
    Conserved Domains (5) summary
    smart00091
    Location:154 → 215
    PAS; PAS domain
    cd00083
    Location:60 → 112
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:332 → 435
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:158 → 224
    PAS; PAS fold
    pfam08447
    Location:345 → 432
    PAS_3; PAS fold

  3. XM_015980545.2 → XP_015836031.1  protein trachealess isoform X3

    UniProtKB/TrEMBL
    D7EII8
    Related
    XP_015836031.1, XM_015980545.2
    Conserved Domains (5) summary
    smart00091
    Location:135 → 196
    PAS; PAS domain
    cd00083
    Location:41 → 93
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:313 → 416
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:139 → 205
    PAS; PAS fold
    pfam08447
    Location:326 → 413
    PAS_3; PAS fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials