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LOC6549129 transcription factor collier [ Drosophila erecta ]

Gene ID: 6549129, updated on 21-Dec-2023

Summary

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Gene symbol
LOC6549129
Gene description
transcription factor collier
Locus tag
Dere_GG22397
See related
EnsemblRapid:LOC6549129
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG22397; GG22397-PB; GG22397-PC; GG22397-PD; GG22397-PE; GG22397-PF
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Genomic context

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See LOC6549129 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825207.1 (7591663..7626353, complement)

NW_020825207.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113564244 Neighboring gene uncharacterized LOC6549130 Neighboring gene uncharacterized LOC6549060 Neighboring gene glucose 1,6-bisphosphate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825207 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription factor collier
Names
Dere\GG22397
Dere\GG22397-PB
Dere\GG22397-PC
Dere\GG22397-PD
Dere\GG22397-PE
Dere\GG22397-PF
dere_GLEANR_7131

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825207.1 Reference DereRS2

    Range
    7591663..7626353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015156892.2 → XP_015012378.2  LOW QUALITY PROTEIN: transcription factor collier

    Related
    XP_015012378.2, XM_015156892.2
    Conserved Domains (3) summary
    cd11606
    Location:189 → 400
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:436 → 520
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:522 → 565
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
Nucleotide Protein
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