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Ftz fushi tarazu [ Tribolium castaneum (red flour beetle) ]

Gene ID: 654512, updated on 20-Mar-2025

Summary

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Gene symbol
Ftz
Gene description
fushi tarazu
Locus tag
TcasGA2_TC000916
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
all
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Genomic context

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See Ftz in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (6814775..6824378, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (8414664..8415746)

Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135265883 Neighboring gene microRNA mir-10 Neighboring gene cephalothorax Neighboring gene uncharacterized LOC135265861 Neighboring gene prothoraxless

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The beetle Tribolium castaneum has a fushi tarazu homolog expressed in stripes during segmentation. Brown SJ, et al. Proc Natl Acad Sci U S A, 1994 Dec 20. PMID 7809147, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fushi tarazu
Names
AUGUSTUS-3.0.2_00916
GLEAN_00916

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039450.1 → NP_001034539.1  fushi tarazu

    See identical proteins and their annotated locations for NP_001034539.1

    Status: PROVISIONAL

    Source sequence(s)
    AF321227
    UniProtKB/TrEMBL
    Q26868, Q9BK05
    Conserved Domains (2) summary
    COG5576
    Location:133 → 244
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:186 → 239
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

    Range
    6814775..6824378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064355977.1 → XP_064212047.1  fushi tarazu isoform X2

    UniProtKB/TrEMBL
    Q26868

  2. XM_064355976.1 → XP_064212046.1  fushi tarazu isoform X1

    UniProtKB/TrEMBL
    Q26868, Q95UR1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials