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SNHG20 small nucleolar RNA host gene 20 [ Homo sapiens (human) ]

Gene ID: 654434, updated on 10-May-2019

Summary

Official Symbol
SNHG20provided by HGNC
Official Full Name
small nucleolar RNA host gene 20provided by HGNC
Primary source
HGNC:HGNC:33099
See related
Ensembl:ENSG00000234912
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C17orf86; LINC00338; NCRNA00338; SCARNA16HG
Expression
Ubiquitous expression in thyroid (RPKM 3.2), spleen (RPKM 2.9) and 25 other tissues See more

Genomic context

See SNHG20 in Genome Data Viewer
Location:
17q25.2
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (77088643..77094986)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (75084725..75091068)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B Neighboring gene uncharacterized LOC105371899 Neighboring gene uncharacterized LOC105371900 Neighboring gene small Cajal body-specific RNA 16 Neighboring gene SEC14 like lipid binding 1 Neighboring gene microRNA 6516 Neighboring gene uncharacterized LOC105371901

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Readthrough SEC14L1

Readthrough gene: SEC14L1

Other Names

  • long intergenic non-protein coding RNA 338
  • small nucleolar RNA host gene 20 (non-protein coding)

Clone Names

  • PRO0872, FLJ25582, DKFZp686L05235

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027058.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015815, AF130050, DA068554, DA916381
    Related
    ENST00000434411.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p12 Primary Assembly

    Range
    77088643..77094986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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