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PAX8-AS1 PAX8 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 654433, updated on 12-Oct-2019

Summary

Official Symbol
PAX8-AS1provided by HGNC
Official Full Name
PAX8 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49271
See related
Ensembl:ENSG00000189223
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 22.6), adrenal (RPKM 9.3) and 19 other tissues See more

Genomic context

See PAX8-AS1 in Genome Data Viewer
Location:
2q14.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (113235527..113267023)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (113993104..114024600)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor antagonist Neighboring gene pleckstrin and Sec7 domain containing 4 Neighboring gene paired box 8 Neighboring gene PAX8 promoter region Neighboring gene uncharacterized LOC105373567 Neighboring gene uncharacterized LOC101927400

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Clone Names

  • FLJ17200, FLJ31793, FLJ44467, DKFZp547P134, DKFZp686E10196

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015377.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC036699, BF056746
    Related
    ENST00000436293.6
  2. NR_047570.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several segments and has an alternate terminal exon compared to variant 1.
    Source sequence(s)
    AK056052, AK130275, AY007128, CA416382, DA573927
    Related
    ENST00000437551.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    113235527..113267023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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