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LSP1P4 LSP1 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 654342, updated on 10-Oct-2023

Summary

Official Symbol
LSP1P4provided by HGNC
Official Full Name
LSP1 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:53915
See related
AllianceGenome:HGNC:53915
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 15.8), kidney (RPKM 9.3) and 23 other tissues See more
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Genomic context

See LSP1P4 in Genome Data Viewer
Location:
2p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91636683..91659949, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91826407..91849675, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (91824709..91847975, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MAPK-interacting and spindle-stabilizing protein-like Neighboring gene OCT4 hESC enhancer GRCh37_chr2:91744009-91744510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91762682-91763600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91763601-91764518 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:91782891-91783056 Neighboring gene otopetrin 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91800405-91800908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91814909-91815410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91815411-91815910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91815988-91816557 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820030-91820530 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820531-91821031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91846385-91847216 Neighboring gene RNA, 5S ribosomal pseudogene 100 Neighboring gene dopamine receptor D5 pseudogene 1 Neighboring gene lysine methyltransferase 2C pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027238.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BF031534, BM826054

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    91636683..91659949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    91826407..91849675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)