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C530005A16Rik RIKEN cDNA C530005A16 gene [ Mus musculus (house mouse) ]

Gene ID: 654318, updated on 8-Feb-2024

Summary

Official Symbol
C530005A16Rikprovided by MGI
Official Full Name
RIKEN cDNA C530005A16 geneprovided by MGI
Primary source
MGI:MGI:3612454
See related
Ensembl:ENSMUSG00000085408 AllianceGenome:MGI:3612454
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D930044c15rik
Expression
Ubiquitous expression in lung adult (RPKM 5.1), ovary adult (RPKM 4.2) and 28 other tissues See more
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Genomic context

See C530005A16Rik in Genome Data Viewer
Location:
4 D1; 4 53.23 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (116446930..116454827, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (116589733..116597630, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116180277-116180386 Neighboring gene IAP promoted placental gene Neighboring gene STARR-seq mESC enhancer starr_11140 Neighboring gene transmembrane protein 69 Neighboring gene GC-rich promoter binding protein 1-like 1 Neighboring gene coiled-coil domain containing 17 Neighboring gene nuclear autoantigenic sperm protein (histone-binding) Neighboring gene STARR-positive B cell enhancer ABC_E4648 Neighboring gene STARR-positive B cell enhancer ABC_E4649 Neighboring gene STARR-positive B cell enhancer ABC_E7980 Neighboring gene aldo-keto reductase family 1, member A1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029450.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL669953
    Related
    ENSMUST00000142815.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    116446930..116454827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)