Format

Send to:

Choose Destination

TCAF2P1 TRPM8 channel associated factor 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 653691, updated on 23-Nov-2021

Summary

Official Symbol
TCAF2P1provided by HGNC
Official Full Name
TRPM8 channel associated factor 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33603
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM115D; FAM139B; TCAF2BP
Expression
Ubiquitous expression in esophagus (RPKM 4.4), placenta (RPKM 3.6) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TCAF2P1 in Genome Data Viewer
Location:
7q35
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (143809990..143815389)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143507083..143512482)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 Neighboring gene ribosomal protein L26 pseudogene 24 Neighboring gene family with sequence similarity 115, member C pseudogene Neighboring gene uncharacterized LOC112267988 Neighboring gene TRPM8 channel associated factor 1 Neighboring gene uncharacterized LOC105375549

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • family with sequence similarity 115, member D (pseudogene)
  • family with sequence similarity 139, member B

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110549.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099548, BG748361, CB046449

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    143809990..143815389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_018654714.1 Reference GRCh38.p13 PATCHES

    Range
    354290..359691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_008025.2: Suppressed sequence

    Description
    NG_008025.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Support Center