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SEC1P secretory blood group 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 653677, updated on 22-Aug-2020

Summary

Official Symbol
SEC1Pprovided by HGNC
Official Full Name
secretory blood group 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:44149
See related
Ensembl:ENSG00000232871
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SEC1
Expression
Broad expression in testis (RPKM 2.7), brain (RPKM 1.0) and 20 other tissues See more

Genomic context

See SEC1P in Genome Data Viewer
Location:
19q13.33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (48638039..48682245)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (49141296..49185502)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L18 Neighboring gene sphingosine kinase 2 Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene carbonic anhydrase 11 Neighboring gene netrin 5 Neighboring gene uncharacterized LOC105372431 Neighboring gene uncharacterized LOC105447645 Neighboring gene fucosyltransferase 2 Neighboring gene MEF2 activating motif and SAP domain containing transcriptional regulator

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

Associated conditions

Description Tests
Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.
GeneReviews: Not available

General gene information

Markers

Other Names

  • alpha(1,2) fucosyltransferase pseudogene

Clone Names

  • FLJ58287, DKFZp434P0672

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004401.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA922053, AC008888, AK301238, DC353776
    Related
    ENST00000430145.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    48638039..48682245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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