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TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene [ Homo sapiens (human) ]

Gene ID: 653645, updated on 17-Jun-2019

Summary

Official Symbol
TBC1D3P1-DHX40P1provided by HGNC
Official Full Name
TBC1D3P1-DHX40P1 readthrough, transcribed pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:42362
See related
Ensembl:ENSG00000267104
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DHX40P; DHX40P1; TBC1D3P1
Summary
This locus represents naturally-occurring readthrough transcription that extends through two unprocessed pseudogenes, TBC1D3P1 (TBC1 domain family member 3 pseudogene 1) and DHX40P1 (DEAH-box helicase 40 pseudogene 1), to protein-coding RNFT1 (ring finger protein, transmembrane 1). The individual pseudogene loci are not curated as transcribed regions. The readthrough transcript likely does not encode a functional protein, since translation of the long open reading frames would render the transcript a candidate for nonsense-mediated decay (NMD). [provided by RefSeq, Jan 2016]
Expression
Broad expression in testis (RPKM 23.8), thyroid (RPKM 6.2) and 24 other tissues See more

Genomic context

See TBC1D3P1-DHX40P1 in Genome Data Viewer
Location:
17q23.1
Exon count:
14
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (59962363..60019052, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58053385..58096336, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene tubulin delta 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2 Neighboring gene ribosomal protein S6 kinase B1 Neighboring gene ribosomal protein S29 pseudogene 21 Neighboring gene ring finger protein, transmembrane 1 Neighboring gene RNFT1 divergent transcript Neighboring gene DEAH-box helicase 40 pseudogene 1 Neighboring gene uncharacterized LOC105371848 Neighboring gene TBC1 domain family member 3 pseudogene 1 Neighboring gene microRNA 4737 Neighboring gene HEAT repeat containing 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Other Names

  • TBC1 domain family, member 3 pseudogene 1
  • TBC1D3-DHX40 pseudogene
  • TBC1D3P1-DHX40P1 readthrough (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002924.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005702, BC029885, DB024853
    Related
    ENST00000587125.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    59962363..60019052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005461.4: Suppressed sequence

    Description
    NG_005461.4: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed. [smh]
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