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LYPLA2P1 LYPLA2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 653639, updated on 17-Jun-2024

Summary

Official Symbol
LYPLA2P1provided by HGNC
Official Full Name
LYPLA2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:21069
See related
AllianceGenome:HGNC:21069
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
APT; LYPLA2L; dJ570F3.6
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Genomic context

See LYPLA2P1 in Genome Data Viewer
Location:
6p21.32
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33364737..33366362, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33186099..33187724, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (33332514..33334139, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901303 Neighboring gene small integral membrane protein 40 Neighboring gene MYL12B pseudogene 3 Neighboring gene MPRA-validated peak5757 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33316599-33317100 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33317101-33317600 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:33322798-33323394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33325184-33325780 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:33330150-33330334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33331653-33332152 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33332216-33332916 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33332917-33333615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33343116-33343616 Neighboring gene ribosomal protein L35a pseudogene 4 Neighboring gene kinesin family member C1 Neighboring gene ribosomal protein L12 pseudogene 1

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027926.2 

    Range
    101..1726
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    33364737..33366362 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_167244.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    4669391..4671016 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    4776222..4777847 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_5

Genomic

  1. NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5

    Range
    4800675..4802300 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6

    Range
    4559159..4560784 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    33186099..33187724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_001444.3: Suppressed sequence

    Description
    NR_001444.3: This RefSeq was permanently suppressed because there is insufficient evidence that this pseudogene locus is transcribed.