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SCGB1C2 secretoglobin family 1C member 2 [ Homo sapiens (human) ]

Gene ID: 653486, updated on 23-Nov-2021

Summary

Official Symbol
SCGB1C2provided by HGNC
Official Full Name
secretoglobin family 1C member 2provided by HGNC
Primary source
HGNC:HGNC:51242
See related
Ensembl:ENSG00000268320
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SCGB1C1
Expression
Low expression observed in reference dataset See more
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Genomic context

See SCGB1C2 in Genome Data Viewer
Location:
17p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (132346..139067)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 (PATCHES) NW_004070872.2 (77569..79067)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929823 Neighboring gene general transcription factor IIi pseudogene 17 Neighboring gene uncharacterized LOC101929828 Neighboring gene double C2 domain beta Neighboring gene long intergenic non-protein coding RNA 2091

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
secretoglobin family 1C member 2
Names
Secretoglobin RYD5
Secretoglobin family 1C member 1
secretoglobin, family 1C, member 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097610.3NP_001091079.1  secretoglobin family 1C member 2 precursor

    See identical proteins and their annotated locations for NP_001091079.1

    Status: VALIDATED

    Source sequence(s)
    AC240565
    Consensus CDS
    CCDS73933.1
    UniProtKB/Swiss-Prot
    P0DMR2, Q8TD33
    Related
    ENSP00000471646.2, ENST00000595228.4
    Conserved Domains (1) summary
    pfam01099
    Location:2891
    Uteroglobin; Uteroglobin family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    132346..139067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011535362.2XP_011533664.1  secretoglobin family 1C member 2 isoform X1

    See identical proteins and their annotated locations for XP_011533664.1

    Conserved Domains (1) summary
    cd00633
    Location:71136
    Secretoglobin; Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical ...

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315952.3 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    77569..79067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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