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AFDN-DT AFDN divergent transcript [ Homo sapiens (human) ]

Gene ID: 653483, updated on 13-May-2022

Summary

Official Symbol
AFDN-DTprovided by HGNC
Official Full Name
AFDN divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:21236
See related
AllianceGenome:HGNC:21236
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HGC6.4; XBP1SBM; AFDN-AS1; C6orf124; MLLT4-AS1; dJ431P23.3
Expression
Broad expression in prostate (RPKM 1.2), testis (RPKM 1.0) and 22 other tissues See more
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Genomic context

See AFDN-DT in Genome Data Viewer
Location:
6q27
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167823890..167826796, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169162096..169165002, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (168224570..168227476, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1558 Neighboring gene uncharacterized LOC441179 Neighboring gene Sharpr-MPRA regulatory region 935 Neighboring gene afadin, adherens junction formation factor Neighboring gene Sharpr-MPRA regulatory region 4710 Neighboring gene uncharacterized LOC107986673

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • AFDN antisense RNA 1 (head to head)
  • MLLT4 antisense RNA 1 (head to head)
  • MLLT4 antisense RNA 1 (non-protein coding)
  • XBP1s binding micropeptide

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027906.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB016898, DC331926, DC427335

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167823890..167826796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    169162096..169165002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001042508.3: Suppressed sequence

    Description
    NM_001042508.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.